Automatic segmentation of levator ani muscle in MRI images based on DenseUnet model

Objective To construct a deep learning automatic segmentation model based on the magnetic resonance image (MRI) of the pelvic floor, and make the intelligent segmentation of the pelvic floor MR image so as to reduce the work intensity of doctors and improve the segmentation efficiency and accuracy o...

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Main Authors: XIANG Yongjia, WU Yi, ZHANG Xiaoqin, HU Xin, LIU Jingjing, LEI Ling, WANG Yanzhou, WANG Yan
Format: Article
Language:zho
Published: Editorial Office of Journal of Third Military Medical University 2021-09-01
Series:Di-san junyi daxue xuebao
Subjects:
Online Access:http://aammt.tmmu.edu.cn/Upload/rhtml/202102089.htm
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spelling doaj-a6411ec5299247759286e83cdfa5770c2021-09-29T05:26:02ZzhoEditorial Office of Journal of Third Military Medical UniversityDi-san junyi daxue xuebao1000-54042021-09-0143181720172810.16016/j.1000-5404.202102089Automatic segmentation of levator ani muscle in MRI images based on DenseUnet modelXIANG Yongjia0 WU Yi1ZHANG Xiaoqin2 HU Xin3LIU Jingjing4LEI Ling5WANG Yanzhou6 WANG Yan7Chongqing Key Laboratory of Smart Finance and Big Data Analysis, School of Mathematical Sciences, Chongqing Normal University, Chongqing, 401331Department of Engineering and Imaging Medicine, Cdlege of Biomedical Engineering and Imaging Medicine, Army Medical University (Third Military Medical University), Chongqing, 400038Department of Engineering and Imaging Medicine, Cdlege of Biomedical Engineering and Imaging Medicine, Army Medical University (Third Military Medical University), Chongqing, 400038Department of Engineering and Imaging Medicine, Cdlege of Biomedical Engineering and Imaging Medicine, Army Medical University (Third Military Medical University), Chongqing, 400038Department of Engineering and Imaging Medicine, Cdlege of Biomedical Engineering and Imaging Medicine, Army Medical University (Third Military Medical University), Chongqing, 400038 Department of Gynecology, Anshun People's Hospital, Anshun, Guizhou Province, 561000 Department of Obstetrics and Gynecology, First Affiliated Hospital, Army Medical University (Third Military Medical University), Chongqing, 400038, ChinaChongqing Key Laboratory of Smart Finance and Big Data Analysis, School of Mathematical Sciences, Chongqing Normal University, Chongqing, 401331Objective To construct a deep learning automatic segmentation model based on the magnetic resonance image (MRI) of the pelvic floor, and make the intelligent segmentation of the pelvic floor MR image so as to reduce the work intensity of doctors and improve the segmentation efficiency and accuracy of levator ani muscle. Methods Based on DenseUnet model, a network structure composed of encoder module, context extraction module and decoder module was established; In the context extraction module, we used dilated convolution and pyramid pooling module to overcome the disadvantages that Unet uses less context information and global information under different receptive fields. We employed the MRI data of 19 patients, including 14 normal cases, 1 case of grade 1 pelvic organ prolapse (POP1) and 2 cases of grade 2 pelvic organ prolapse (POP2) as training sets. One normal pelvic floor MRI image and 1 POP2 pelvic floor MR image were used for verification. Results The model can segment levator ani muscle in pelvic floor MR image automatically and effectively. Through verification, the average similarity coefficient of levator ani muscle in the test set is 77.1%, the average Hausdorff distance is 16 mm, and the average symmetry plane distance is 0.9 mm. The average similarity coefficient of levator ani muscle in normal volunteers was 81.2%, and that of POP2 female pelvic floor levator ani muscle was 74.5%. Conclusion The segmentation accuracy of DenseUnet model is better than that of Unet, ResUnet and Unet++. It has a strong practical value in the automatic segmentation task of levator ani muscle in MRI images. Through the automatic segmentation of levator ani muscle, the repetitive work of doctors is reduced, and the work efficiency is improved. At the same time, it also provides an alternative for the intelligent auxiliary diagnosis and treatment of pelvic organ prolapse.http://aammt.tmmu.edu.cn/Upload/rhtml/202102089.htmconvolutional neural networkimage segmentationintelligent assisted diagnosis
collection DOAJ
language zho
format Article
sources DOAJ
author XIANG Yongjia
WU Yi
ZHANG Xiaoqin
HU Xin
LIU Jingjing
LEI Ling
WANG Yanzhou
WANG Yan
spellingShingle XIANG Yongjia
WU Yi
ZHANG Xiaoqin
HU Xin
LIU Jingjing
LEI Ling
WANG Yanzhou
WANG Yan
Automatic segmentation of levator ani muscle in MRI images based on DenseUnet model
Di-san junyi daxue xuebao
convolutional neural network
image segmentation
intelligent assisted diagnosis
author_facet XIANG Yongjia
WU Yi
ZHANG Xiaoqin
HU Xin
LIU Jingjing
LEI Ling
WANG Yanzhou
WANG Yan
author_sort XIANG Yongjia
title Automatic segmentation of levator ani muscle in MRI images based on DenseUnet model
title_short Automatic segmentation of levator ani muscle in MRI images based on DenseUnet model
title_full Automatic segmentation of levator ani muscle in MRI images based on DenseUnet model
title_fullStr Automatic segmentation of levator ani muscle in MRI images based on DenseUnet model
title_full_unstemmed Automatic segmentation of levator ani muscle in MRI images based on DenseUnet model
title_sort automatic segmentation of levator ani muscle in mri images based on denseunet model
publisher Editorial Office of Journal of Third Military Medical University
series Di-san junyi daxue xuebao
issn 1000-5404
publishDate 2021-09-01
description Objective To construct a deep learning automatic segmentation model based on the magnetic resonance image (MRI) of the pelvic floor, and make the intelligent segmentation of the pelvic floor MR image so as to reduce the work intensity of doctors and improve the segmentation efficiency and accuracy of levator ani muscle. Methods Based on DenseUnet model, a network structure composed of encoder module, context extraction module and decoder module was established; In the context extraction module, we used dilated convolution and pyramid pooling module to overcome the disadvantages that Unet uses less context information and global information under different receptive fields. We employed the MRI data of 19 patients, including 14 normal cases, 1 case of grade 1 pelvic organ prolapse (POP1) and 2 cases of grade 2 pelvic organ prolapse (POP2) as training sets. One normal pelvic floor MRI image and 1 POP2 pelvic floor MR image were used for verification. Results The model can segment levator ani muscle in pelvic floor MR image automatically and effectively. Through verification, the average similarity coefficient of levator ani muscle in the test set is 77.1%, the average Hausdorff distance is 16 mm, and the average symmetry plane distance is 0.9 mm. The average similarity coefficient of levator ani muscle in normal volunteers was 81.2%, and that of POP2 female pelvic floor levator ani muscle was 74.5%. Conclusion The segmentation accuracy of DenseUnet model is better than that of Unet, ResUnet and Unet++. It has a strong practical value in the automatic segmentation task of levator ani muscle in MRI images. Through the automatic segmentation of levator ani muscle, the repetitive work of doctors is reduced, and the work efficiency is improved. At the same time, it also provides an alternative for the intelligent auxiliary diagnosis and treatment of pelvic organ prolapse.
topic convolutional neural network
image segmentation
intelligent assisted diagnosis
url http://aammt.tmmu.edu.cn/Upload/rhtml/202102089.htm
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