Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays

Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays

Show other versions (1)

<p>Abstract</p> <p>Background</p> <p>Alternative splicing and isoform level expression profiling is an emerging field of interest within genomics. Splicing sensitive microarrays, with probes targeted to individual exons or exon-junctions, are becoming increasingly popul...

Full description

Bibliographic Details
Main Authors:	Kwan Tony, Benovoy David, Bemmo Amandine, Gaffney Daniel J, Jensen Roderick V, Majewski Jacek
Format:	Article
Language:	English
Published:	BMC 2008-11-01
Series:	BMC Genomics
Online Access:	http://www.biomedcentral.com/1471-2164/9/529

Similar Items

Gene expression and isoform variation analysis using Affymetrix exon arrays
by: Kwan Tony, et al.
Published: (2009-03-01)

Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation
by: Coulombe-Huntington Jasmin, et al.
Published: (2009-11-01)

A new method for determining isoform expression of the Affymetrix GeneChip®Exon Array
by: 邢恆嘉
Published: (2007)

Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
by: Aramburu Ander, et al.
Published: (2010-11-01)

Probe selection and expression index computation of Affymetrix Exon Arrays.
by: Yi Xing, et al.
Published: (2006-12-01)

Comprehensive analysis of affymetrix exon arrays using BioConductor.
by: Michał J Okoniewski, et al.
Published: (2008-02-01)

Genome-wide analysis of antisense transcription with Affymetrix exon array
by: Jung Yong-chul, et al.
Published: (2008-01-01)

A comparison of Affymetrix gene expression arrays
by: Robinson Mark D, et al.
Published: (2007-11-01)

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
by: Consiglio Arianna, et al.
Published: (2012-03-01)

Experimental comparison and evaluation of the Affymetrix exon and U133Plus2 GeneChip arrays.
by: Diana Abdueva, et al.
Published: (2007-09-01)

easyExon – A Java-based GUI tool for processing and visualization of Affymetrix exon array data
by: Lin Chi-Hung, et al.
Published: (2008-10-01)

Comparison of Nasal Epithelial Smoking-Induced Gene Expression on Affymetrix Exon 1.0 and Gene 1.0 ST Arrays
by: Xiaoling Zhang, et al.
Published: (2013-01-01)

Comprehensive survey of SNPs in the Affymetrix exon array using the 1000 Genomes dataset.
by: Eric R Gamazon, et al.
Published: (2010-02-01)

Characterization of transcript isoform variations in human and chimpanzee
by: Benovoy, David
Published: (2009)

Dissecting an alternative splicing analysis workflow for GeneChip<sup>® </sup>Exon 1.0 ST Affymetrix arrays
by: Calogero Raffaele A, et al.
Published: (2008-11-01)

Different effects of the probe summarization algorithms PLIER and RMA on high-level analysis of Affymetrix exon arrays
by: Chen Yuchen, et al.
Published: (2010-04-01)

Performances de la puce exon et son application dans l’analyse de l’épissage alternatif associé à la métastase du cancer de sein
by: Bemmo, Amandine
Published: (2010)

Performances de la puce exon et son application dans l’analyse de l’épissage alternatif associé à la métastase du cancer de sein
by: Bemmo, Amandine
Published: (2010)

Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays
by: Iyer Hari, et al.
Published: (2007-04-01)

Exon-level transcriptome profiling in murine breast cancer reveals splicing changes specific to tumors with different metastatic abilities.
by: Amandine Bemmo, et al.
Published: (2010-08-01)

Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays
by: Hsiao-fang Lin, et al.

A comparison of statistical methods for identifying differentially expressed genes using Affymetrix oligonucleotide arrays
by: Hsin-I Lee, et al.
Published: (2005)

Sources of variation in Affymetrix microarray experiments
by: Parrish Rudolph S, et al.
Published: (2005-08-01)

AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs
by: Weller Jennifer W, et al.
Published: (2007-07-01)

Feasibility of developing reliable gene expression modules from FFPE derived RNA profiled on Affymetrix arrays.
by: Vinu Jose, et al.
Published: (2018-01-01)

Reproducibility of gene expression across generations of Affymetrix microarrays
by: Haslett Judith N, et al.
Published: (2003-06-01)

Pooled DNA genotyping on Affymetrix SNP genotyping arrays
by: Owen Michael J, et al.
Published: (2006-02-01)

Improved SNP detection with SNPscanner for Affymetrix tiling arrays
by: Wan-Chi Cheng, et al.
Published: (2008)

Hybridization and amplification rate correction for affymetrix SNP arrays
by: Wang Quan, et al.
Published: (2012-06-01)

Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data.
by: Jean-Baptiste Veyrieras, et al.
Published: (2012-01-01)

Methods for evaluating gene expression from Affymetrix microarray datasets
by: Waugh Robbie, et al.
Published: (2008-06-01)

Using surveys of Affymetrix GeneChips to study antisense expression
by: Sanchez-Graillet Olivia, et al.
Published: (2010-06-01)

EzArray: A web-based highly automated Affymetrix expression array data management and analysis system
by: Zhu Yuelin, et al.
Published: (2008-01-01)

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
by: Kardia Sharon LR, et al.
Published: (2011-05-01)

The relationship between gene isoform multiplicity, number of exons and protein divergence.
by: Jordi Morata, et al.
Published: (2013-01-01)

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips
by: Asgharnegad Lida, et al.
Published: (2005-06-01)

A Brassica exon array for whole-transcript gene expression profiling.
by: Christopher G Love, et al.
Published: (2010-09-01)

Exon expression arrays as a tool to identify new cancer genes.
by: Mieke Schutte, et al.
Published: (2008-01-01)

ExonMiner: Web service for analysis of GeneChip Exon array data
by: Imoto Seiya, et al.
Published: (2008-11-01)

High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array
by: Clément Mabire, et al.
Published: (2019-11-01)