Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement

Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement

<p>Abstract</p> <p>Background</p> <p>The Medium-chain Dehydrogenases/Reductases (MDR) form a protein superfamily whose size and complexity defeats traditional means of subclassification; it currently has over 15000 members in the databases, the pairwise sequence identit...

Full description

Bibliographic Details
Main Authors:	Persson Bengt, Jörnvall Hans, Hedlund Joel
Format:	Article
Language:	English
Published:	BMC 2010-10-01
Series:	BMC Bioinformatics
Online Access:	http://www.biomedcentral.com/1471-2105/11/534

Similar Items

BRICHOS - a superfamily of multidomain proteins with diverse functions
by: Johansson Jan, et al.
Published: (2009-09-01)

Automatic refinement of hidden Markov models for speech recognition
by: Schlueter, Stephen
Published: (2008)

Vector refinable splines and subdivision
by: Andriamaro, Miangaly Gaelle
Published: (2009)

The Plant Short-Chain Dehydrogenase (SDR) superfamily: genome-wide inventory and diversification patterns
by: Moummou Hanane, et al.
Published: (2012-11-01)

Interpolatory bivariate refinable functions and subdivision
by: Rabarison, Andrianarivo Fabien
Published: (2009)

Interpolatory refinable functions, subdivision and wavelets
by: Hunter, Karin M.
Published: (2007)

Iterative Decoding and Channel Estimation over Hidden Markov Fading Channels
by: Khan, Anwer Ali
Published: (2014)

Hidden Markov model speed heuristic and iterative HMM search procedure
by: Johnson L Steven, et al.
Published: (2010-08-01)

Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach
by: Ikura Mitsuhiko, et al.
Published: (2002-01-01)

The Aldehyde Dehydrogenase Gene Superfamily Resource Center
by: Black William, et al.
Published: (2009-12-01)

Update on the aldehyde dehydrogenase gene (<it>ALDH</it>) superfamily
by: Jackson Brian, et al.
Published: (2011-05-01)

Aldo-keto reductase (AKR) superfamily: Genomics and annotation
by: Mindnich Rebekka D, et al.
Published: (2009-07-01)

Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction
by: Scheeff Eric D, et al.
Published: (2006-09-01)

An Iterative Reduced KPCA Hidden Markov Model for Gas Turbine Performance Fault Diagnosis
by: Feng Lu, et al.
Published: (2018-07-01)

Feature Selection for Hidden Markov Models and Hidden Semi-Markov Models
by: Stephen Adams, et al.
Published: (2016-01-01)

RSpred, a set of Hidden Markov Models to detect and classify the RIFIN and STEVOR proteins of <it>Plasmodium falciparum</it>
by: Wahlgren Mats, et al.
Published: (2011-02-01)

Fast, sensitive protein sequence searches using iterative pairwise comparison of hidden Markov models
by: Remmert, Michael
Published: (2011)

Application of Hidden Markov and Hidden Semi-Markov Models to Financial Time Series
by: Bulla, Jan
Published: (2013)

Dihydropyrimidine dehydrogenase of rat liver : separation into reductase and dehydrogenase activities
by: Smith, Astley Eugene
Published: (2013)

Dihydropyrimidine dehydrogenase of rat liver : separation into reductase and dehydrogenase activities
by: Smith, Astley Eugene
Published: (2013)

Hidden Markov Models Theory and Applications
Published: (2011)

Inhibitors of the Candida albicans Major Facilitator Superfamily Transporter Mdr1p Responsible for Fluconazole Resistance.
by: Mikhail V Keniya, et al.
Published: (2015-01-01)

A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models
by: Papasaikas Panagiotis K, et al.
Published: (2005-04-01)

On the analysis of refinable functions with respect to mask factorisation, regularity and corresponding subdivision convergence
by: De Wet, Wouter de Vos
Published: (2008)

Genome-wide identification and analysis of grape aldehyde dehydrogenase (ALDH) gene superfamily.
by: Yucheng Zhang, et al.
Published: (2012-01-01)

Semi-Markov and hidden semi-Markov models of energy systems
by: Obzherin Yuriy E.
Published: (2018-01-01)

Evolution of the ferric reductase domain (FRD) superfamily: modularity, functional diversification, and signature motifs.
by: Xuezhi Zhang, et al.
Published: (2013-01-01)

Iterative process to improve simple adaptive subdivision surfaces method for triangular meshes
by: Husain, Noor Asma
Published: (2012)

Closing target trimming and CTTdocker programs for discovering hidden superfamily loci in genomes.
by: Zhihua Hua, et al.
Published: (2019-01-01)

Hidden Markov Model for Stock Selection
by: Nguyet Nguyen, et al.
Published: (2015-10-01)

Neuroevolution Mechanism for Hidden Markov Model
by: Nabil M. Hewahi
Published: (2011-12-01)

Hidden Markov Model for Stock Trading
by: Nguyet Nguyen
Published: (2018-03-01)

Evolving the Structure of Hidden Markov Models
by: Won, Kyoung-Jae, et al.
Published: (2006)

Hidden Markov models for credit risk
by: Staples, Jonathan Peter
Published: (2006)

Structure discovery in hidden Markov models.
by: Murrell, Ben.
Published: (2012)

Hidden Markov Models in Speech Recognition
by: Jan Krajcovic, et al.
Published: (2008-01-01)

Hidden Markov Models in Genetics and Linguistics
by: Keys, Kevin Lawrence
Published: (2010)

Discriminative training of hidden Markov models
by: Kapadia, Sadik
Published: (1998)

Bayesian computation for hidden Markov models
by: Foreman, Lindsay Anne
Published: (1994)

Model reduction for Hidden Markov models
by: Kotsalis, Georgios
Published: (2007)

Cannot write session to /tmp/vufind_sessions/sess_kvjkn9n8idcitume29buhecinf