UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents

Vitamin A deficiency is a prevalent health problem in many areas of the world, where cassava genotypes with high pro-vitamin A content have been identified as a strategy to address this issue. In this study, we found a positive correlation between the color of the root pulp and the total carotenoid...

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Main Authors: Afonso Telma, Moresco Rodolfo, Uarrota Virgilio G., Navarro Bruno Bachiega, Nunes Eduardo da C., Maraschin Marcelo, Rocha Miguel
Format: Article
Language:English
Published: De Gruyter 2017-12-01
Series:Journal of Integrative Bioinformatics
Subjects:
Online Access:https://doi.org/10.1515/jib-2017-0056
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spelling doaj-9de2b1c5dc2e461ab706cb590d8b2af32021-09-06T19:40:32ZengDe GruyterJournal of Integrative Bioinformatics1613-45162017-12-01144336410.1515/jib-2017-0056jib-2017-0056UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid ContentsAfonso Telma0Moresco Rodolfo1Uarrota Virgilio G.2Navarro Bruno Bachiega3Nunes Eduardo da C.4Maraschin Marcelo5Rocha Miguel6Centre Biological Engineering, School of Engineering, University of Minho, Braga, PortugalPlant Morphogenesis and Biochemistry Laboratory, Federal University of Santa Catarina, Florianopolis, BrazilPlant Morphogenesis and Biochemistry Laboratory, Federal University of Santa Catarina, Florianopolis, BrazilPlant Morphogenesis and Biochemistry Laboratory, Federal University of Santa Catarina, Florianopolis, BrazilSanta Catarina State Agricultural Research and Rural Extension Agency (EPAGRI), Experimental Station of Urussanga, Urussanga, BrazilPlant Morphogenesis and Biochemistry Laboratory, Federal University of Santa Catarina, Florianopolis, BrazilCentre Biological Engineering, School of Engineering, University of Minho, Braga, PortugalVitamin A deficiency is a prevalent health problem in many areas of the world, where cassava genotypes with high pro-vitamin A content have been identified as a strategy to address this issue. In this study, we found a positive correlation between the color of the root pulp and the total carotenoid contents and, importantly, showed how CIELAB color measurements can be used as a non-destructive and fast technique to quantify the amount of carotenoids in cassava root samples, as opposed to traditional methods. We trained several machine learning models using UV-visible spectrophotometry data, CIELAB data and a low-level data fusion of the two. Best performance models were obtained for the total carotenoids contents calculated using the UV-visible dataset as input, with R2 values above 90 %. Using CIELAB and fusion data, values around 60 % and above 90 % were found. Importantly, these results demonstrated how data fusion can lead to a better model performance for prediction when comparing to the use of a single data source. Considering all these findings, the use of colorimetric data associated with UV-visible and HPLC data through statistical and machine learning methods is a reliable way of predicting the content of total carotenoids in cassava root samples.https://doi.org/10.1515/jib-2017-0056carotenoidscassava genotypeschemometricscielabmachine learning
collection DOAJ
language English
format Article
sources DOAJ
author Afonso Telma
Moresco Rodolfo
Uarrota Virgilio G.
Navarro Bruno Bachiega
Nunes Eduardo da C.
Maraschin Marcelo
Rocha Miguel
spellingShingle Afonso Telma
Moresco Rodolfo
Uarrota Virgilio G.
Navarro Bruno Bachiega
Nunes Eduardo da C.
Maraschin Marcelo
Rocha Miguel
UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents
Journal of Integrative Bioinformatics
carotenoids
cassava genotypes
chemometrics
cielab
machine learning
author_facet Afonso Telma
Moresco Rodolfo
Uarrota Virgilio G.
Navarro Bruno Bachiega
Nunes Eduardo da C.
Maraschin Marcelo
Rocha Miguel
author_sort Afonso Telma
title UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents
title_short UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents
title_full UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents
title_fullStr UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents
title_full_unstemmed UV-Vis and CIELAB Based Chemometric Characterization of Manihot esculenta Carotenoid Contents
title_sort uv-vis and cielab based chemometric characterization of manihot esculenta carotenoid contents
publisher De Gruyter
series Journal of Integrative Bioinformatics
issn 1613-4516
publishDate 2017-12-01
description Vitamin A deficiency is a prevalent health problem in many areas of the world, where cassava genotypes with high pro-vitamin A content have been identified as a strategy to address this issue. In this study, we found a positive correlation between the color of the root pulp and the total carotenoid contents and, importantly, showed how CIELAB color measurements can be used as a non-destructive and fast technique to quantify the amount of carotenoids in cassava root samples, as opposed to traditional methods. We trained several machine learning models using UV-visible spectrophotometry data, CIELAB data and a low-level data fusion of the two. Best performance models were obtained for the total carotenoids contents calculated using the UV-visible dataset as input, with R2 values above 90 %. Using CIELAB and fusion data, values around 60 % and above 90 % were found. Importantly, these results demonstrated how data fusion can lead to a better model performance for prediction when comparing to the use of a single data source. Considering all these findings, the use of colorimetric data associated with UV-visible and HPLC data through statistical and machine learning methods is a reliable way of predicting the content of total carotenoids in cassava root samples.
topic carotenoids
cassava genotypes
chemometrics
cielab
machine learning
url https://doi.org/10.1515/jib-2017-0056
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