Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification

Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification

<p>Abstract</p> <p>Background</p> <p>Gene expression programs depend on recognition of <it>cis </it>elements in promoter region of target genes by transcription factors (TFs), but how TFs regulate gene expression via recognition of <it>cis </it>e...

Full description

Bibliographic Details
Main Authors:	Li Wen-Hsiung, Lee Hsiao-Ching, Lin Li-Hsieh, Chen Bor-Sen
Format:	Article
Language:	English
Published:	BMC 2005-10-01
Series:	BMC Bioinformatics
Online Access:	http://www.biomedcentral.com/1471-2105/6/258

Similar Items

Dynamic Modeling of Cis-Regulatory Circuits by a Cross Gene Identification Scheme and Gene Expression Prediction
by: Li-Hsieh Lin, et al.
Published: (2004)

Systematic identification of cis-regulatory variants that cause gene expression differences in a yeast cross
by: Kaushik Renganaath, et al.
Published: (2020-11-01)

Identification and analysis of conserved cis-regulatory regions of the MEIS1 gene.
by: José Luis Royo, et al.
Published: (2012-01-01)

Cis-regulatory variants affect gene expression dynamics in yeast
by: Ching-Hua Shih, et al.
Published: (2021-08-01)

Cis-regulatory timers for developmental gene expression.
by: Lionel Christiaen
Published: (2013-10-01)

Cis-regulatory elements of the 'Hoxc11' gene
by: Blumer, ZoeÌˆ Danielle
Published: (2005)

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks
by: Zeynep Kalender Atak, et al.
Published: (2017-08-01)

Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana
by: Georg Back, et al.
Published: (2021-05-01)

Identification of a <it>cis</it>-regulatory element by transient analysis of co-ordinately regulated genes
by: Allan Andrew C, et al.
Published: (2008-07-01)

Identification and Characterization of a cis-Regulatory Element for Zygotic Gene Expression in Chlamydomonas reinhardtii
by: Takashi Hamaji, et al.
Published: (2016-06-01)

Identification and expression analysis of genes with pathogen-inducible cis-regulatory elements in the promoter regions in Oryza sativa
by: Weiwen Kong, et al.
Published: (2018-09-01)

Plasticity of the cis-regulatory input function of a gene.
by: Avraham E Mayo, et al.
Published: (2006-04-01)

MotifClick: prediction of <it>cis</it>-regulatory binding sites via merging cliques
by: Su Zhengchang, et al.
Published: (2011-06-01)

Identification of gene co-regulatory modules and associated <it>cis-</it>elements involved in degenerative heart disease
by: Danko Charles G, et al.
Published: (2009-05-01)

Nutritional control of gene expression in <it>Drosophila </it>larvae via TOR, Myc and a novel cis-regulatory element
by: Grewal Savraj S, et al.
Published: (2010-01-01)

Identification of responsive genes and analysis of genes with bacterial-inducible cis-regulatory elements in the promoter regions in Oryza sativa L.
by: Abbas SAIDI, et al.
Published: (2020-09-01)

On the Interplay between Entropy and Robustness of Gene Regulatory Networks
by: Bor-Sen Chen, et al.
Published: (2010-05-01)

A cis-regulatory signature for chordate anterior neuroectodermal genes.
by: Maximilian Haeussler, et al.
Published: (2010-04-01)

Identifying regulatory targets of cell cycle transcription factors using gene expression and ChIP-chip data
by: Li Wen-Hsiung, et al.
Published: (2007-06-01)

<it>Cis</it>-regulatory variations: A study of SNPs around genes showing <it>cis</it>-linkage in segregating mouse populations
by: Li Guoya, et al.
Published: (2006-09-01)

Construction and Clarification of Dynamic Gene Regulatory Network of Cancer Cell Cycle via Microarray Data
by: Cheng-Wei Li, et al.
Published: (2006-01-01)

Construction and Clarification of Dynamic Gene Regulatory Network of Cancer Cell Cycle via Microarray Data
by: Cheng-Wei Li, et al.
Published: (2006-01-01)

Characterization of Putative cis-Regulatory Elements in Genes Preferentially Expressed in Arabidopsis Male Meiocytes
by: Junhua Li, et al.
Published: (2014-01-01)

Understanding the Dynamics of Gene Regulatory Systems; Characterisation and Clinical Relevance of cis-Regulatory Polymorphisms
by: Philip Cowie, et al.
Published: (2013-01-01)

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.
by: Jonas Carlsson Almlöf, et al.
Published: (2012-01-01)

Detection of gene cis-regulatory element perturbations in single-cell transcriptomes.
by: Grace Hui Ting Yeo, et al.
Published: (2021-03-01)

Subfunctionalization of duplicated zebrafish pax6 genes by cis-regulatory divergence.
by: Dirk A Kleinjan, et al.
Published: (2008-02-01)

Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila.
by: Margaret C W Ho, et al.
Published: (2009-11-01)

Investigation of cis-regulatory variation in candidate genes for psychiatric and neurodegenerative disease
by: Hayesmoore, Jesse B. G.
Published: (2009)

Bioinformatics design of cis-regulatory elements controlling human gene expression
by: Farkas, Rachelle
Published: (2017)

Detection of gene cis-regulatory element perturbations in single-cell transcriptomes
by: Yeo, Grace Hui Ting, et al.
Published: (2021)

Identification of Aedes aegypti cis-regulatory elements that promote gene expression in olfactory receptor neurons of distantly related dipteran insects
by: Keshava Mysore, et al.
Published: (2018-07-01)

Understanding trait evolution at the levels of a cis-regulatory element and a gene regulatory network
by: Rogers, William A.
Published: (2014)

Analysis and identification of cis-acting regulatory elements of MDR1, a multidrug resistance gene in Candida albicans
by: HanLun Lo, et al.
Published: (2002)

Cis-regulatory analysis of the sea urchin delta gene : validating the architecture of the gene regulatory network model for micromere lineage specification
by: Revilla-i-Domingo, Roger
Published: (2007)

Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in <i>Arabidopsis thaliana</i>
by: Yichao Li, et al.
Published: (2020-12-01)

GPMiner: an integrated system for mining combinatorial <it>cis</it>-regulatory elements in mammalian gene group
by: Lee Tzong-Yi, et al.
Published: (2012-01-01)

Evaluation of combinatorial <it>cis</it>-regulatory elements for stable gene expression in chicken cells
by: Seo Hee W, et al.
Published: (2010-09-01)

Putative <it>cis</it>-regulatory elements in genes highly expressed in rice sperm cells
by: Singh Mohan B, et al.
Published: (2011-09-01)

Modeling the cis-regulatory modules of genes expressed in developmental stages of Drosophila melanogaster
by: Yosvany López, et al.
Published: (2017-05-01)