Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life Cycles

Volvariella volvacea is an important crop in Southeast Asia, but erratic fruiting presents a serious challenge for its production and breeding. Efforts to explain inconsistent fruiting have been complicated by the multinucleate nature, typical lack of clamp connections, and an incompletely identifie...

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Main Authors: Bingzhi Chen, Arend F. van Peer, Junjie Yan, Xiao Li, Bin Xie, Juan Miao, Qianhui Huang, Lei Zhang, Wei Wang, Junsheng Fu, Xiang Zhang, Xiaoyin Zhang, Fengli Hu, Qingfang Kong, Xianyun Sun, Feng Zou, Hanxing Zhang, Shaojie Li, Baogui Xie
Format: Article
Language:English
Published: Oxford University Press 2016-07-01
Series:G3: Genes, Genomes, Genetics
Subjects:
Online Access:http://g3journal.org/lookup/doi/10.1534/g3.116.030700
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spelling doaj-9cf8e7d5634540dc8ad884d5ef9e58a52021-07-02T11:08:01ZengOxford University PressG3: Genes, Genomes, Genetics2160-18362016-07-01672135214610.1534/g3.116.03070033Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life CyclesBingzhi ChenArend F. van PeerJunjie YanXiao LiBin XieJuan MiaoQianhui HuangLei ZhangWei WangJunsheng FuXiang ZhangXiaoyin ZhangFengli HuQingfang KongXianyun SunFeng ZouHanxing ZhangShaojie LiBaogui XieVolvariella volvacea is an important crop in Southeast Asia, but erratic fruiting presents a serious challenge for its production and breeding. Efforts to explain inconsistent fruiting have been complicated by the multinucleate nature, typical lack of clamp connections, and an incompletely identified sexual reproductive system. In this study, we addressed the life cycle of V. volvacea using whole genome sequencing, cloning of MAT loci, karyotyping of spores, and fruiting assays. Microscopy analysis of spores had previously indicated the possible coexistence of heterothallic and homothallic life cycles. Our analysis of the MAT loci showed that only MAT-A, and not MAT-B, controlled heterokaryotization. Thus, the heterothallic life cycle was bipolar. Karyotyping of single spore isolates (SSIs) using molecular markers supported the existence of heterokaryotic spores. However, most SSIs were clearly not heterokaryotic, yet contained structural variation (SV) markers relating to both alleles of both parents. Heterokaryons from crossed, self-sterile homokaryons could produce fruiting bodies, agreeing with bipolar heterothallism. Meanwhile, some SSIs with two different MAT-A loci also produced fruiting bodies, which supported secondary homothallism. Next, SSIs that clearly contained only one MAT-A locus (homothallism) were also able to fruit, demonstrating that self-fertile SSIs were not, per definition, secondary homothallic, and that a third life cycle or genetic mechanism must exist. Finally, recombination between SV markers was normal, yet 10 out of 24 SV markers showed 1:2 or 1:3 distributions in the spores, and large numbers of SSIs contained doubled SV markers. This indicated selfish genes, and possibly partial aneuploidy.http://g3journal.org/lookup/doi/10.1534/g3.116.030700Volvariella volvaceagenomic analysismating-type systemaneuploidyamphithallic
collection DOAJ
language English
format Article
sources DOAJ
author Bingzhi Chen
Arend F. van Peer
Junjie Yan
Xiao Li
Bin Xie
Juan Miao
Qianhui Huang
Lei Zhang
Wei Wang
Junsheng Fu
Xiang Zhang
Xiaoyin Zhang
Fengli Hu
Qingfang Kong
Xianyun Sun
Feng Zou
Hanxing Zhang
Shaojie Li
Baogui Xie
spellingShingle Bingzhi Chen
Arend F. van Peer
Junjie Yan
Xiao Li
Bin Xie
Juan Miao
Qianhui Huang
Lei Zhang
Wei Wang
Junsheng Fu
Xiang Zhang
Xiaoyin Zhang
Fengli Hu
Qingfang Kong
Xianyun Sun
Feng Zou
Hanxing Zhang
Shaojie Li
Baogui Xie
Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life Cycles
G3: Genes, Genomes, Genetics
Volvariella volvacea
genomic analysis
mating-type system
aneuploidy
amphithallic
author_facet Bingzhi Chen
Arend F. van Peer
Junjie Yan
Xiao Li
Bin Xie
Juan Miao
Qianhui Huang
Lei Zhang
Wei Wang
Junsheng Fu
Xiang Zhang
Xiaoyin Zhang
Fengli Hu
Qingfang Kong
Xianyun Sun
Feng Zou
Hanxing Zhang
Shaojie Li
Baogui Xie
author_sort Bingzhi Chen
title Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life Cycles
title_short Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life Cycles
title_full Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life Cycles
title_fullStr Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life Cycles
title_full_unstemmed Fruiting Body Formation in Volvariella volvacea Can Occur Independently of Its MAT-A-Controlled Bipolar Mating System, Enabling Homothallic and Heterothallic Life Cycles
title_sort fruiting body formation in volvariella volvacea can occur independently of its mat-a-controlled bipolar mating system, enabling homothallic and heterothallic life cycles
publisher Oxford University Press
series G3: Genes, Genomes, Genetics
issn 2160-1836
publishDate 2016-07-01
description Volvariella volvacea is an important crop in Southeast Asia, but erratic fruiting presents a serious challenge for its production and breeding. Efforts to explain inconsistent fruiting have been complicated by the multinucleate nature, typical lack of clamp connections, and an incompletely identified sexual reproductive system. In this study, we addressed the life cycle of V. volvacea using whole genome sequencing, cloning of MAT loci, karyotyping of spores, and fruiting assays. Microscopy analysis of spores had previously indicated the possible coexistence of heterothallic and homothallic life cycles. Our analysis of the MAT loci showed that only MAT-A, and not MAT-B, controlled heterokaryotization. Thus, the heterothallic life cycle was bipolar. Karyotyping of single spore isolates (SSIs) using molecular markers supported the existence of heterokaryotic spores. However, most SSIs were clearly not heterokaryotic, yet contained structural variation (SV) markers relating to both alleles of both parents. Heterokaryons from crossed, self-sterile homokaryons could produce fruiting bodies, agreeing with bipolar heterothallism. Meanwhile, some SSIs with two different MAT-A loci also produced fruiting bodies, which supported secondary homothallism. Next, SSIs that clearly contained only one MAT-A locus (homothallism) were also able to fruit, demonstrating that self-fertile SSIs were not, per definition, secondary homothallic, and that a third life cycle or genetic mechanism must exist. Finally, recombination between SV markers was normal, yet 10 out of 24 SV markers showed 1:2 or 1:3 distributions in the spores, and large numbers of SSIs contained doubled SV markers. This indicated selfish genes, and possibly partial aneuploidy.
topic Volvariella volvacea
genomic analysis
mating-type system
aneuploidy
amphithallic
url http://g3journal.org/lookup/doi/10.1534/g3.116.030700
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