Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural Networks

In many applications of tomography, the acquired data are limited in one or more ways due to unavoidable experimental constraints. In such cases, popular direct reconstruction algorithms tend to produce inaccurate images, and more accurate iterative algorithms often have prohibitively high computati...

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Main Authors: Daniël M. Pelt, Kees Joost Batenburg, James A. Sethian
Format: Article
Language:English
Published: MDPI AG 2018-10-01
Series:Journal of Imaging
Subjects:
Online Access:https://www.mdpi.com/2313-433X/4/11/128
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spelling doaj-9c73422a48404e7e9b50001536d0a72e2020-11-24T20:50:42ZengMDPI AGJournal of Imaging2313-433X2018-10-0141112810.3390/jimaging4110128jimaging4110128Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural NetworksDaniël M. Pelt0Kees Joost Batenburg1James A. Sethian2Centrum Wiskunde & Informatica, Science Park 123, 1098 XG Amsterdam, The NetherlandsCentrum Wiskunde & Informatica, Science Park 123, 1098 XG Amsterdam, The NetherlandsDepartment of Mathematics, University of California, Berkeley, CA 94720, USAIn many applications of tomography, the acquired data are limited in one or more ways due to unavoidable experimental constraints. In such cases, popular direct reconstruction algorithms tend to produce inaccurate images, and more accurate iterative algorithms often have prohibitively high computational costs. Using machine learning to improve the image quality of direct algorithms is a recently proposed alternative, for which promising results have been shown. However, previous attempts have focused on using encoder⁻decoder networks, which have several disadvantages when applied to large tomographic images, preventing wide application in practice. Here, we propose the use of the Mixed-Scale Dense convolutional neural network architecture, which was specifically designed to avoid these disadvantages, to improve tomographic reconstruction from limited data. Results are shown for various types of data limitations and object types, for both simulated data and large-scale real-world experimental data. The results are compared with popular tomographic reconstruction algorithms and machine learning algorithms, showing that Mixed-Scale Dense networks are able to significantly improve reconstruction quality even with severely limited data, and produce more accurate results than existing algorithms.https://www.mdpi.com/2313-433X/4/11/128machine learningdeep learningimage reconstructiontomography
collection DOAJ
language English
format Article
sources DOAJ
author Daniël M. Pelt
Kees Joost Batenburg
James A. Sethian
spellingShingle Daniël M. Pelt
Kees Joost Batenburg
James A. Sethian
Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural Networks
Journal of Imaging
machine learning
deep learning
image reconstruction
tomography
author_facet Daniël M. Pelt
Kees Joost Batenburg
James A. Sethian
author_sort Daniël M. Pelt
title Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural Networks
title_short Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural Networks
title_full Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural Networks
title_fullStr Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural Networks
title_full_unstemmed Improving Tomographic Reconstruction from Limited Data Using Mixed-Scale Dense Convolutional Neural Networks
title_sort improving tomographic reconstruction from limited data using mixed-scale dense convolutional neural networks
publisher MDPI AG
series Journal of Imaging
issn 2313-433X
publishDate 2018-10-01
description In many applications of tomography, the acquired data are limited in one or more ways due to unavoidable experimental constraints. In such cases, popular direct reconstruction algorithms tend to produce inaccurate images, and more accurate iterative algorithms often have prohibitively high computational costs. Using machine learning to improve the image quality of direct algorithms is a recently proposed alternative, for which promising results have been shown. However, previous attempts have focused on using encoder⁻decoder networks, which have several disadvantages when applied to large tomographic images, preventing wide application in practice. Here, we propose the use of the Mixed-Scale Dense convolutional neural network architecture, which was specifically designed to avoid these disadvantages, to improve tomographic reconstruction from limited data. Results are shown for various types of data limitations and object types, for both simulated data and large-scale real-world experimental data. The results are compared with popular tomographic reconstruction algorithms and machine learning algorithms, showing that Mixed-Scale Dense networks are able to significantly improve reconstruction quality even with severely limited data, and produce more accurate results than existing algorithms.
topic machine learning
deep learning
image reconstruction
tomography
url https://www.mdpi.com/2313-433X/4/11/128
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