Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case

The way that progenitor cell fate decisions and the associated environmental sensing are regulated to ensure the robustness of the spatial and temporal order in which cells are generated towards a fully differentiating tissue still remains elusive. Here, we investigate how cells regulate their sensi...

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Main Authors: Arnab Barua, Alireza Beygi, Haralampos Hatzikirou
Format: Article
Language:English
Published: MDPI AG 2021-07-01
Series:Entropy
Subjects:
Online Access:https://www.mdpi.com/1099-4300/23/7/867
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spelling doaj-98bd132d7f244601810b34e9d31d1a8b2021-07-23T13:39:43ZengMDPI AGEntropy1099-43002021-07-012386786710.3390/e23070867Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic CaseArnab Barua0Alireza Beygi1Haralampos Hatzikirou2Centre for Information Services and High Performance Computing, Technische Universität Dresden, Nöthnitzer Straße 46, 01062 Dresden, GermanyCentre for Information Services and High Performance Computing, Technische Universität Dresden, Nöthnitzer Straße 46, 01062 Dresden, GermanyCentre for Information Services and High Performance Computing, Technische Universität Dresden, Nöthnitzer Straße 46, 01062 Dresden, GermanyThe way that progenitor cell fate decisions and the associated environmental sensing are regulated to ensure the robustness of the spatial and temporal order in which cells are generated towards a fully differentiating tissue still remains elusive. Here, we investigate how cells regulate their sensing intensity and radius to guarantee the required thermodynamic robustness of a differentiated tissue. In particular, we are interested in finding the conditions where dedifferentiation at cell level is possible (microscopic reversibility), but tissue maintains its spatial order and differentiation integrity (macroscopic irreversibility). In order to tackle this, we exploit the recently postulated Least microEnvironmental Uncertainty Principle (LEUP) to develop a theory of stochastic thermodynamics for cell differentiation. To assess the predictive and explanatory power of our theory, we challenge it against the avian photoreceptor mosaic data. By calibrating a single parameter, the LEUP can predict the cone color spatial distribution in the avian retina and, at the same time, suggest that such a spatial pattern is associated with quasi-optimal cell sensing. By means of the stochastic thermodynamics formalism, we find out that thermodynamic robustness of differentiated tissues depends on cell metabolism and cell sensing properties. In turn, we calculate the limits of the cell sensing radius that ensure the robustness of differentiated tissue spatial order. Finally, we further constrain our model predictions to the avian photoreceptor mosaic.https://www.mdpi.com/1099-4300/23/7/867cell decision-makingcell differentiationcell metabolismcell sensingentropy maximizationLeast Microenvironmental Uncertainty Principle (LEUP)
collection DOAJ
language English
format Article
sources DOAJ
author Arnab Barua
Alireza Beygi
Haralampos Hatzikirou
spellingShingle Arnab Barua
Alireza Beygi
Haralampos Hatzikirou
Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case
Entropy
cell decision-making
cell differentiation
cell metabolism
cell sensing
entropy maximization
Least Microenvironmental Uncertainty Principle (LEUP)
author_facet Arnab Barua
Alireza Beygi
Haralampos Hatzikirou
author_sort Arnab Barua
title Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case
title_short Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case
title_full Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case
title_fullStr Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case
title_full_unstemmed Close to Optimal Cell Sensing Ensures the Robustness of Tissue Differentiation Process: The Avian Photoreceptor Mosaic Case
title_sort close to optimal cell sensing ensures the robustness of tissue differentiation process: the avian photoreceptor mosaic case
publisher MDPI AG
series Entropy
issn 1099-4300
publishDate 2021-07-01
description The way that progenitor cell fate decisions and the associated environmental sensing are regulated to ensure the robustness of the spatial and temporal order in which cells are generated towards a fully differentiating tissue still remains elusive. Here, we investigate how cells regulate their sensing intensity and radius to guarantee the required thermodynamic robustness of a differentiated tissue. In particular, we are interested in finding the conditions where dedifferentiation at cell level is possible (microscopic reversibility), but tissue maintains its spatial order and differentiation integrity (macroscopic irreversibility). In order to tackle this, we exploit the recently postulated Least microEnvironmental Uncertainty Principle (LEUP) to develop a theory of stochastic thermodynamics for cell differentiation. To assess the predictive and explanatory power of our theory, we challenge it against the avian photoreceptor mosaic data. By calibrating a single parameter, the LEUP can predict the cone color spatial distribution in the avian retina and, at the same time, suggest that such a spatial pattern is associated with quasi-optimal cell sensing. By means of the stochastic thermodynamics formalism, we find out that thermodynamic robustness of differentiated tissues depends on cell metabolism and cell sensing properties. In turn, we calculate the limits of the cell sensing radius that ensure the robustness of differentiated tissue spatial order. Finally, we further constrain our model predictions to the avian photoreceptor mosaic.
topic cell decision-making
cell differentiation
cell metabolism
cell sensing
entropy maximization
Least Microenvironmental Uncertainty Principle (LEUP)
url https://www.mdpi.com/1099-4300/23/7/867
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AT alirezabeygi closetooptimalcellsensingensurestherobustnessoftissuedifferentiationprocesstheavianphotoreceptormosaiccase
AT haralamposhatzikirou closetooptimalcellsensingensurestherobustnessoftissuedifferentiationprocesstheavianphotoreceptormosaiccase
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