Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

A central problem in biodiversity estimation from genetic markers is the ability of algorithms to retain ‘true’ species while discarding artefacts. Here, the authors present a new post-clusturing curation algorithm using OTU co-occurrences to estimate plant biodiversity from soil samples.

Bibliographic Details
Main Authors:	Tobias Guldberg Frøslev, Rasmus Kjøller, Hans Henrik Bruun, Rasmus Ejrnæs, Ane Kirstine Brunbjerg, Carlotta Pietroni, Anders Johannes Hansen
Format:	Article
Language:	English
Published:	Nature Publishing Group 2017-10-01
Series:	Nature Communications
Online Access:	https://doi.org/10.1038/s41467-017-01312-x

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spelling	doaj-975c7cf0009c45ba887ad7892c9a476d2021-05-11T07:53:56ZengNature Publishing GroupNature Communications2041-17232017-10-018111110.1038/s41467-017-01312-xAlgorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimatesTobias Guldberg Frøslev0Rasmus Kjøller1Hans Henrik Bruun2Rasmus Ejrnæs3Ane Kirstine Brunbjerg4Carlotta Pietroni5Anders Johannes Hansen6Department of Biology, University of CopenhagenDepartment of Biology, University of CopenhagenDepartment of Biology, University of CopenhagenDepartment of Bioscience, University of AarhusDepartment of Bioscience, University of AarhusNatural History Museum of Denmark, University of CopenhagenNatural History Museum of Denmark, University of CopenhagenA central problem in biodiversity estimation from genetic markers is the ability of algorithms to retain ‘true’ species while discarding artefacts. Here, the authors present a new post-clusturing curation algorithm using OTU co-occurrences to estimate plant biodiversity from soil samples.https://doi.org/10.1038/s41467-017-01312-x
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	Tobias Guldberg Frøslev Rasmus Kjøller Hans Henrik Bruun Rasmus Ejrnæs Ane Kirstine Brunbjerg Carlotta Pietroni Anders Johannes Hansen
spellingShingle	Tobias Guldberg Frøslev Rasmus Kjøller Hans Henrik Bruun Rasmus Ejrnæs Ane Kirstine Brunbjerg Carlotta Pietroni Anders Johannes Hansen Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates Nature Communications
author_facet	Tobias Guldberg Frøslev Rasmus Kjøller Hans Henrik Bruun Rasmus Ejrnæs Ane Kirstine Brunbjerg Carlotta Pietroni Anders Johannes Hansen
author_sort	Tobias Guldberg Frøslev
title	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_short	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_full	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_fullStr	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_full_unstemmed	Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
title_sort	algorithm for post-clustering curation of dna amplicon data yields reliable biodiversity estimates
publisher	Nature Publishing Group
series	Nature Communications
issn	2041-1723
publishDate	2017-10-01
description	A central problem in biodiversity estimation from genetic markers is the ability of algorithms to retain ‘true’ species while discarding artefacts. Here, the authors present a new post-clusturing curation algorithm using OTU co-occurrences to estimate plant biodiversity from soil samples.
url	https://doi.org/10.1038/s41467-017-01312-x
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Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates

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