| Summary: | <p>Abstract</p> <p>Background</p> <p>The nematode <it>Pristionchus pacificus </it>has originally been developed as a satellite organism for comparison to <it>Caenorhabditis elegans</it>. A 10X coverage of the whole genome of <it>P. pacificus </it>is available, making <it>P. pacificus </it>the first non-<it>Caenorhabditis </it>nematode with a fully sequenced genome. The macroevolutionary comparison between <it>P. pacificus </it>and <it>C. elegans </it>has been complemented by microevolutionary studies of closely related strains and species within the genus <it>Pristionchus</it>. In addition, new understanding of the biology of <it>Pristionchus </it>from field studies, demonstrating a close association with various scarab beetles and the Colorado potato beetle, supports consideration of this nematode in studies of ecosystems. In the course of field studies on four continents more than 1,200 isolates were established from 15,000 beetle specimens representing 18 <it>Pristionchus </it>species. Two remarkable features of the <it>Pristionchus </it>– beetle association are the high species specificity of the interaction and the interception of the beetle's sex communication system for host recognition by the nematodes, as suggested by chemotaxis studies. Evolutionary interpretations of differences in developmental, behavioral and ecological patterns require a phylogenetic framework of the genus <it>Pristionchus</it>.</p> <p>Results</p> <p>Here, we provide a robust phylogeny of all 18 available <it>Pristionchus </it>species based on a set of 27 ribosomal protein genes encompassing a total of 10,971 bp. The phylogenetic tree provides evidence for North American and European clades, which are embedded in a deeper clade that includes Asian species. It also indicates putative invasion events. Of the 18 <it>Pristionchus </it>species, 13 are gonochoristic and five are hermaphroditic. The phylogeny indicates that all hermaphroditic species have arisen independently within the genus <it>Pristionchus</it>.</p> <p>Conclusion</p> <p>Combined ribosomal protein cDNA data can provide the basis for reconstruction of a robust phylogenetic framework for microevolutionary and biogeographic analyses. An additional major implication of our studies is the use of <it>Pristionchus </it>for nematode biodiversity assessments. While some species are represented by more than 100 isolates, others were found less than four times. Such patterns were observed on all continents and in all phylogenetic clades indicating that species asymmetry is a widespread phenomenon, which can now be further investigated by molecular tools.</p>
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