Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
Bacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strain...
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2011-01-01
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Series: | International Journal of Microbiology |
Online Access: | http://dx.doi.org/10.1155/2011/673136 |
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doaj-95a9109bf588460dbe79975abd18e2092021-07-02T09:36:13ZengHindawi LimitedInternational Journal of Microbiology1687-918X1687-91982011-01-01201110.1155/2011/673136673136Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species DefinitionK. Kealy Peak0Kathleen E. Duncan1Vicki A. Luna2Debra S. King3Peter J. McCarthy4Andrew C. Cannons5USF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USADepartment of Botany and Microbiology, University of Oklahoma, 770 Van Vleet Oval, Norman, OK 73019-6131, USAUSF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USAUSF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USAHarbor Branch Oceanographic Institute at Florida Atlantic University, 5600 US No. 1 North, Fort Pierce, FL 34946, USAUSF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USABacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strains were all far below the recommended 70% threshold value for species circumscription with Bacillus nealsonii. An apparent genomic group of four Bacillus strain pairings with 94%–70% S was contradicted by the failure of the strains to cluster in CFA- and phenotype-based dendrograms as well as by their differentiation with 9–13 species level discriminators such as nitrate reduction, temperature range, and acid production from carbohydrates. The novel Bacillus strains were monophyletic and very closely related based on 16S rRNA gene sequence. Coherent genomic groups were not however supported by similarly organized phenotypic clusters. Therefore, the strains were not effectively circumscribed within the taxonomic species definition.http://dx.doi.org/10.1155/2011/673136 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
K. Kealy Peak Kathleen E. Duncan Vicki A. Luna Debra S. King Peter J. McCarthy Andrew C. Cannons |
spellingShingle |
K. Kealy Peak Kathleen E. Duncan Vicki A. Luna Debra S. King Peter J. McCarthy Andrew C. Cannons Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition International Journal of Microbiology |
author_facet |
K. Kealy Peak Kathleen E. Duncan Vicki A. Luna Debra S. King Peter J. McCarthy Andrew C. Cannons |
author_sort |
K. Kealy Peak |
title |
Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition |
title_short |
Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition |
title_full |
Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition |
title_fullStr |
Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition |
title_full_unstemmed |
Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition |
title_sort |
bacillus strains most closely related to bacillus nealsonii are not effectively circumscribed within the taxonomic species definition |
publisher |
Hindawi Limited |
series |
International Journal of Microbiology |
issn |
1687-918X 1687-9198 |
publishDate |
2011-01-01 |
description |
Bacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strains were all far below the recommended 70% threshold value for species circumscription with Bacillus nealsonii. An apparent genomic group of four Bacillus strain pairings with 94%–70% S was contradicted by the failure of the strains to cluster in CFA- and phenotype-based dendrograms as well as by their differentiation with 9–13 species level discriminators such as nitrate reduction, temperature range, and acid production from carbohydrates. The novel Bacillus strains were monophyletic and very closely related based on 16S rRNA gene sequence. Coherent genomic groups were not however supported by similarly organized phenotypic clusters. Therefore, the strains were not effectively circumscribed within the taxonomic species definition. |
url |
http://dx.doi.org/10.1155/2011/673136 |
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