Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition

Bacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strain...

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Main Authors: K. Kealy Peak, Kathleen E. Duncan, Vicki A. Luna, Debra S. King, Peter J. McCarthy, Andrew C. Cannons
Format: Article
Language:English
Published: Hindawi Limited 2011-01-01
Series:International Journal of Microbiology
Online Access:http://dx.doi.org/10.1155/2011/673136
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spelling doaj-95a9109bf588460dbe79975abd18e2092021-07-02T09:36:13ZengHindawi LimitedInternational Journal of Microbiology1687-918X1687-91982011-01-01201110.1155/2011/673136673136Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species DefinitionK. Kealy Peak0Kathleen E. Duncan1Vicki A. Luna2Debra S. King3Peter J. McCarthy4Andrew C. Cannons5USF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USADepartment of Botany and Microbiology, University of Oklahoma, 770 Van Vleet Oval, Norman, OK 73019-6131, USAUSF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USAUSF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USAHarbor Branch Oceanographic Institute at Florida Atlantic University, 5600 US No. 1 North, Fort Pierce, FL 34946, USAUSF Center for Biological Defense, College of Public Health, University of South Florida, 3602 Spectrum Boulevard, Tampa, FL 33612-9401, USABacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strains were all far below the recommended 70% threshold value for species circumscription with Bacillus nealsonii. An apparent genomic group of four Bacillus strain pairings with 94%–70% S was contradicted by the failure of the strains to cluster in CFA- and phenotype-based dendrograms as well as by their differentiation with 9–13 species level discriminators such as nitrate reduction, temperature range, and acid production from carbohydrates. The novel Bacillus strains were monophyletic and very closely related based on 16S rRNA gene sequence. Coherent genomic groups were not however supported by similarly organized phenotypic clusters. Therefore, the strains were not effectively circumscribed within the taxonomic species definition.http://dx.doi.org/10.1155/2011/673136
collection DOAJ
language English
format Article
sources DOAJ
author K. Kealy Peak
Kathleen E. Duncan
Vicki A. Luna
Debra S. King
Peter J. McCarthy
Andrew C. Cannons
spellingShingle K. Kealy Peak
Kathleen E. Duncan
Vicki A. Luna
Debra S. King
Peter J. McCarthy
Andrew C. Cannons
Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
International Journal of Microbiology
author_facet K. Kealy Peak
Kathleen E. Duncan
Vicki A. Luna
Debra S. King
Peter J. McCarthy
Andrew C. Cannons
author_sort K. Kealy Peak
title Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_short Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_full Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_fullStr Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_full_unstemmed Bacillus Strains Most Closely Related to Bacillus nealsonii Are Not Effectively Circumscribed within the Taxonomic Species Definition
title_sort bacillus strains most closely related to bacillus nealsonii are not effectively circumscribed within the taxonomic species definition
publisher Hindawi Limited
series International Journal of Microbiology
issn 1687-918X
1687-9198
publishDate 2011-01-01
description Bacillus strains with >99.7% 16S rRNA gene sequence similarity were characterized with DNA:DNA hybridization, cellular fatty acid (CFA) analysis, and testing of 100 phenotypic traits. When paired with the most closely related type strain, percent DNA:DNA similarities (% S) for six Bacillus strains were all far below the recommended 70% threshold value for species circumscription with Bacillus nealsonii. An apparent genomic group of four Bacillus strain pairings with 94%–70% S was contradicted by the failure of the strains to cluster in CFA- and phenotype-based dendrograms as well as by their differentiation with 9–13 species level discriminators such as nitrate reduction, temperature range, and acid production from carbohydrates. The novel Bacillus strains were monophyletic and very closely related based on 16S rRNA gene sequence. Coherent genomic groups were not however supported by similarly organized phenotypic clusters. Therefore, the strains were not effectively circumscribed within the taxonomic species definition.
url http://dx.doi.org/10.1155/2011/673136
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