A Review of Deep Learning Methods for Antibodies

A Review of Deep Learning Methods for Antibodies

Driven by its successes across domains such as computer vision and natural language processing, deep learning has recently entered the field of biology by aiding in cellular image classification, finding genomic connections, and advancing drug discovery. In drug discovery and protein engineering, a...

Full description

Bibliographic Details
Main Authors:	Jordan Graves, Jacob Byerly, Eduardo Priego, Naren Makkapati, S. Vince Parish, Brenda Medellin, Monica Berrondo
Format:	Article
Language:	English
Published:	MDPI AG 2020-04-01
Series:	Antibodies
Subjects:	antibody antigen machine learning deep learning neural networks binding prediction
Online Access:	https://www.mdpi.com/2073-4468/9/2/12

Similar Items

Peptide-Major Histocompatibility Complex Class I Binding Prediction Based on Deep Learning With Novel Feature
by: Tianyi Zhao, et al.
Published: (2019-11-01)

DeepNetBim: deep learning model for predicting HLA-epitope interactions based on network analysis by harnessing binding and immunogenicity information
by: Li, J., et al.
Published: (2021)

DeepDISE: DNA Binding Site Prediction Using a Deep Learning Method
by: Samuel Godfrey Hendrix, et al.
Published: (2021-05-01)

Natural and Man-made Antibody Repertories for Antibody Discovery
by: Juan C eAlmagro
Published: (2012-11-01)

EFFICIENCY OF DIFFERENT TECHNIQUES FOR ANTIBODY DETERMINATION AND TESTING OF ANTIGEN-BINDING LYMPHOCYTES IN DIAGNOSTICS OF BRUCELLOSIS
by: B. V. Karalnik, et al.
Published: (2014-07-01)

Can Machines Learn to Predict Weather? Using Deep Learning to Predict Gridded 500‐hPa Geopotential Height From Historical Weather Data
by: Jonathan A. Weyn, et al.
Published: (2019-08-01)

Deep Learning for Facial Beauty Prediction
by: Kerang Cao, et al.
Published: (2020-08-01)

Antibody Specific B-Cell Epitope Predictions: Leveraging Information From Antibody-Antigen Protein Complexes
by: Martin Closter Jespersen, et al.
Published: (2019-02-01)

DeepCNF-D: Predicting Protein Order/Disorder Regions by Weighted Deep Convolutional Neural Fields
by: Sheng Wang, et al.
Published: (2015-07-01)

DeepHLApan: A Deep Learning Approach for Neoantigen Prediction Considering Both HLA-Peptide Binding and Immunogenicity
by: Jingcheng Wu, et al.
Published: (2019-11-01)

Back-to-Germline (B2G) Procedure for Antibody Devolution
by: Anja Schrade, et al.
Published: (2019-08-01)

Deep-Learning-Based Power Generation Forecasting of Thermal Energy Conversion
by: Yu-Sin Lu, et al.
Published: (2020-10-01)

Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction
by: Youngmahn Han, et al.
Published: (2017-12-01)

Editorial: Deep Learning for Toxicity and Disease Prediction
by: Ping Gong, et al.
Published: (2020-02-01)

<inline-formula> <tex-math notation="LaTeX">$DeepMotions$ </tex-math></inline-formula>: A Deep Learning System for Path Prediction Using Similar Motions
by: Mohammed Abdalla, et al.
Published: (2020-01-01)

A Novel Prediction Method for ATP-Binding Sites From Protein Primary Sequences Based on Fusion of Deep Convolutional Neural Network and Ensemble Learning
by: Jiazhi Song, et al.
Published: (2020-01-01)

MHCSeqNet: a deep neural network model for universal MHC binding prediction
by: Poomarin Phloyphisut, et al.
Published: (2019-05-01)

A Survey on Deep Learning for Steering Angle Prediction in Autonomous Vehicles
by: Usman Manzo Gidado, et al.
Published: (2020-01-01)

Template-based prediction of protein structure with deep learning
by: Haicang Zhang, et al.
Published: (2020-12-01)

Prediction of Chromatography Conditions for Purification in Organic Synthesis Using Deep Learning
by: Mantas Vaškevičius, et al.
Published: (2021-04-01)

A Comprehensive Evaluation of Deep Learning-Based Techniques for Traffic Prediction
by: Jesus Mena-Oreja, et al.
Published: (2020-01-01)

Survey on the Application of Deep Learning in Extreme Weather Prediction
by: Wei Fang, et al.
Published: (2021-05-01)

Enhanced Deep Learning Assisted Convolutional Neural Network for Heart Disease Prediction on the Internet of Medical Things Platform
by: Yuanyuan Pan, et al.
Published: (2020-01-01)

A deep neural network approach to predicting clinical outcomes of neuroblastoma patients
by: Léon-Charles Tranchevent, et al.
Published: (2019-12-01)

Prediction of Protein–ATP Binding Residues Based on Ensemble of Deep Convolutional Neural Networks and LightGBM Algorithm
by: Jiazhi Song, et al.
Published: (2021-01-01)

Predicting TCR-Epitope Binding Specificity Using Deep Metric Learning and Multimodal Learning
by: Alan M. Luu, et al.
Published: (2021-04-01)

Use of Deep Multi-Target Prediction to Identify Learning Styles
by: Everton Gomede, et al.
Published: (2020-03-01)

General and Species-Specific Lysine Acetylation Site Prediction Using a Bi-Modal Deep Architecture
by: Xiaowei Zhao, et al.
Published: (2018-01-01)

Biologically relevant transfer learning improves transcription factor binding prediction
by: Gherman Novakovsky, et al.
Published: (2021-09-01)

An Introductory Review of Deep Learning for Prediction Models With Big Data
by: Frank Emmert-Streib, et al.
Published: (2020-02-01)

MATHLA: a robust framework for HLA-peptide binding prediction integrating bidirectional LSTM and multiple head attention mechanism
by: Yilin Ye, et al.
Published: (2021-01-01)

Recent Progress towards Engineering HIV-1-specific Neutralizing Monoclonal Antibodies
by: Ming Sun, et al.
Published: (2016-09-01)

Understanding the Significance and Implications of Antibody Numbering and Antigen-Binding Surface/Residue Definition
by: Mathieu Dondelinger, et al.
Published: (2018-10-01)

AK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks
by: Yongbeom Kwon, et al.
Published: (2020-11-01)

Spectrum Prediction Based on Taguchi Method in Deep Learning With Long Short-Term Memory
by: Ling Yu, et al.
Published: (2018-01-01)

Protein interaction interface region prediction by geometric deep learning
by: Bailey-Kellogg, C., et al.
Published: (2021)

A Guide on Deep Learning for Complex Trait Genomic Prediction
by: Miguel Pérez-Enciso, et al.
Published: (2019-07-01)

Deep neural networks for inferring binding sites of RNA-binding proteins by using distributed representations of RNA primary sequence and secondary structure
by: Lei Deng, et al.
Published: (2020-12-01)

Deep learning accelerators: a case study with MAESTRO
by: Hamidreza Bolhasani, et al.
Published: (2020-11-01)

PUResNet: prediction of protein-ligand binding sites using deep residual neural network
by: Jeevan Kandel, et al.
Published: (2021-09-01)