A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles

In this work, we propose a diffusion MRI protocol for mining Parkinson's disease diffusion MRI datasets and recover robust disease-specific biomarkers. Using advanced high angular resolution diffusion imaging (HARDI) crossing fiber modeling and tractography robust to partial volume effects, we...

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Main Authors: Martin Cousineau, Pierre-Marc Jodoin, Eleftherios Garyfallidis, Marc-Alexandre Côté, Félix C. Morency, Verena Rozanski, Marilyn Grand’Maison, Barry J. Bedell, Maxime Descoteaux
Format: Article
Language:English
Published: Elsevier 2017-01-01
Series:NeuroImage: Clinical
Online Access:http://www.sciencedirect.com/science/article/pii/S2213158217301869
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spelling doaj-9270cca3dd2c4c2a9a119133c8f1857a2020-11-25T00:05:33ZengElsevierNeuroImage: Clinical2213-15822017-01-0116222233A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fasciclesMartin Cousineau0Pierre-Marc Jodoin1Eleftherios Garyfallidis2Marc-Alexandre Côté3Félix C. Morency4Verena Rozanski5Marilyn Grand’Maison6Barry J. Bedell7Maxime Descoteaux8Computer Science Department, Université de Sherbrooke, Sherbrooke, QC, Canada; Corresponding author at: Université de Sherbrooke, Computer Science Department, 2500, de l’Université, Sherbrooke J1K 2R1, PQ, Canada.Computer Science Department, Université de Sherbrooke, Sherbrooke, QC, Canada; Imeka Solutions Inc., Sherbrooke, QC, CanadaDepartment of Intelligent Systems Engineering, School of Informatics and Computing, Indiana University, Bloomington, USAComputer Science Department, Université de Sherbrooke, Sherbrooke, QC, CanadaImeka Solutions Inc., Sherbrooke, QC, CanadaDepartment of Neurology, Klinikum Grosshadern, University of Munich, GermanyBiospective Inc., Montréal, QC, CanadaBiospective Inc., Montréal, QC, Canada; McGill University, Montréal, QC, CanadaComputer Science Department, Université de Sherbrooke, Sherbrooke, QC, Canada; Imeka Solutions Inc., Sherbrooke, QC, CanadaIn this work, we propose a diffusion MRI protocol for mining Parkinson's disease diffusion MRI datasets and recover robust disease-specific biomarkers. Using advanced high angular resolution diffusion imaging (HARDI) crossing fiber modeling and tractography robust to partial volume effects, we automatically dissected 50 white matter (WM) fascicles. These fascicles connect deep nuclei (thalamus, putamen, pallidum) to different cortical functional areas (associative, motor, sensorimotor, limbic), basal forebrain and substantia nigra. Then, among these 50 candidate WM fascicles, only the ones that passed a test-retest reproducibility procedure qualified for further tractometry analysis. Leveraging the unique 2-timepoints test-retest Parkinson's Progression Markers Initiative (PPMI) dataset of over 600 subjects, we found statistically significant differences in tract profiles along the subcortico-cortical pathways between Parkinson's disease patients and healthy controls. In particular, significant increases in FA, apparent fiber density, tract-density and generalized FA were detected in some locations of the nigro-subthalamo-putaminal-thalamo-cortical pathway. This connection is one of the major motor circuits balancing the coordination of motor output. Detailed and quantifiable knowledge on WM fascicles in these areas is thus essential to improve the quality and outcome of Deep Brain Stimulation, and to target new WM locations for investigation. Keywords: Test-retest, Parkinson, White matter, Diffusion, MRI, Tractography, Tractometryhttp://www.sciencedirect.com/science/article/pii/S2213158217301869
collection DOAJ
language English
format Article
sources DOAJ
author Martin Cousineau
Pierre-Marc Jodoin
Eleftherios Garyfallidis
Marc-Alexandre Côté
Félix C. Morency
Verena Rozanski
Marilyn Grand’Maison
Barry J. Bedell
Maxime Descoteaux
spellingShingle Martin Cousineau
Pierre-Marc Jodoin
Eleftherios Garyfallidis
Marc-Alexandre Côté
Félix C. Morency
Verena Rozanski
Marilyn Grand’Maison
Barry J. Bedell
Maxime Descoteaux
A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles
NeuroImage: Clinical
author_facet Martin Cousineau
Pierre-Marc Jodoin
Eleftherios Garyfallidis
Marc-Alexandre Côté
Félix C. Morency
Verena Rozanski
Marilyn Grand’Maison
Barry J. Bedell
Maxime Descoteaux
author_sort Martin Cousineau
title A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles
title_short A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles
title_full A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles
title_fullStr A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles
title_full_unstemmed A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles
title_sort test-retest study on parkinson's ppmi dataset yields statistically significant white matter fascicles
publisher Elsevier
series NeuroImage: Clinical
issn 2213-1582
publishDate 2017-01-01
description In this work, we propose a diffusion MRI protocol for mining Parkinson's disease diffusion MRI datasets and recover robust disease-specific biomarkers. Using advanced high angular resolution diffusion imaging (HARDI) crossing fiber modeling and tractography robust to partial volume effects, we automatically dissected 50 white matter (WM) fascicles. These fascicles connect deep nuclei (thalamus, putamen, pallidum) to different cortical functional areas (associative, motor, sensorimotor, limbic), basal forebrain and substantia nigra. Then, among these 50 candidate WM fascicles, only the ones that passed a test-retest reproducibility procedure qualified for further tractometry analysis. Leveraging the unique 2-timepoints test-retest Parkinson's Progression Markers Initiative (PPMI) dataset of over 600 subjects, we found statistically significant differences in tract profiles along the subcortico-cortical pathways between Parkinson's disease patients and healthy controls. In particular, significant increases in FA, apparent fiber density, tract-density and generalized FA were detected in some locations of the nigro-subthalamo-putaminal-thalamo-cortical pathway. This connection is one of the major motor circuits balancing the coordination of motor output. Detailed and quantifiable knowledge on WM fascicles in these areas is thus essential to improve the quality and outcome of Deep Brain Stimulation, and to target new WM locations for investigation. Keywords: Test-retest, Parkinson, White matter, Diffusion, MRI, Tractography, Tractometry
url http://www.sciencedirect.com/science/article/pii/S2213158217301869
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