A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles
In this work, we propose a diffusion MRI protocol for mining Parkinson's disease diffusion MRI datasets and recover robust disease-specific biomarkers. Using advanced high angular resolution diffusion imaging (HARDI) crossing fiber modeling and tractography robust to partial volume effects, we...
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doaj-9270cca3dd2c4c2a9a119133c8f1857a2020-11-25T00:05:33ZengElsevierNeuroImage: Clinical2213-15822017-01-0116222233A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fasciclesMartin Cousineau0Pierre-Marc Jodoin1Eleftherios Garyfallidis2Marc-Alexandre Côté3Félix C. Morency4Verena Rozanski5Marilyn Grand’Maison6Barry J. Bedell7Maxime Descoteaux8Computer Science Department, Université de Sherbrooke, Sherbrooke, QC, Canada; Corresponding author at: Université de Sherbrooke, Computer Science Department, 2500, de l’Université, Sherbrooke J1K 2R1, PQ, Canada.Computer Science Department, Université de Sherbrooke, Sherbrooke, QC, Canada; Imeka Solutions Inc., Sherbrooke, QC, CanadaDepartment of Intelligent Systems Engineering, School of Informatics and Computing, Indiana University, Bloomington, USAComputer Science Department, Université de Sherbrooke, Sherbrooke, QC, CanadaImeka Solutions Inc., Sherbrooke, QC, CanadaDepartment of Neurology, Klinikum Grosshadern, University of Munich, GermanyBiospective Inc., Montréal, QC, CanadaBiospective Inc., Montréal, QC, Canada; McGill University, Montréal, QC, CanadaComputer Science Department, Université de Sherbrooke, Sherbrooke, QC, Canada; Imeka Solutions Inc., Sherbrooke, QC, CanadaIn this work, we propose a diffusion MRI protocol for mining Parkinson's disease diffusion MRI datasets and recover robust disease-specific biomarkers. Using advanced high angular resolution diffusion imaging (HARDI) crossing fiber modeling and tractography robust to partial volume effects, we automatically dissected 50 white matter (WM) fascicles. These fascicles connect deep nuclei (thalamus, putamen, pallidum) to different cortical functional areas (associative, motor, sensorimotor, limbic), basal forebrain and substantia nigra. Then, among these 50 candidate WM fascicles, only the ones that passed a test-retest reproducibility procedure qualified for further tractometry analysis. Leveraging the unique 2-timepoints test-retest Parkinson's Progression Markers Initiative (PPMI) dataset of over 600 subjects, we found statistically significant differences in tract profiles along the subcortico-cortical pathways between Parkinson's disease patients and healthy controls. In particular, significant increases in FA, apparent fiber density, tract-density and generalized FA were detected in some locations of the nigro-subthalamo-putaminal-thalamo-cortical pathway. This connection is one of the major motor circuits balancing the coordination of motor output. Detailed and quantifiable knowledge on WM fascicles in these areas is thus essential to improve the quality and outcome of Deep Brain Stimulation, and to target new WM locations for investigation. Keywords: Test-retest, Parkinson, White matter, Diffusion, MRI, Tractography, Tractometryhttp://www.sciencedirect.com/science/article/pii/S2213158217301869 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Martin Cousineau Pierre-Marc Jodoin Eleftherios Garyfallidis Marc-Alexandre Côté Félix C. Morency Verena Rozanski Marilyn Grand’Maison Barry J. Bedell Maxime Descoteaux |
spellingShingle |
Martin Cousineau Pierre-Marc Jodoin Eleftherios Garyfallidis Marc-Alexandre Côté Félix C. Morency Verena Rozanski Marilyn Grand’Maison Barry J. Bedell Maxime Descoteaux A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles NeuroImage: Clinical |
author_facet |
Martin Cousineau Pierre-Marc Jodoin Eleftherios Garyfallidis Marc-Alexandre Côté Félix C. Morency Verena Rozanski Marilyn Grand’Maison Barry J. Bedell Maxime Descoteaux |
author_sort |
Martin Cousineau |
title |
A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles |
title_short |
A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles |
title_full |
A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles |
title_fullStr |
A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles |
title_full_unstemmed |
A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles |
title_sort |
test-retest study on parkinson's ppmi dataset yields statistically significant white matter fascicles |
publisher |
Elsevier |
series |
NeuroImage: Clinical |
issn |
2213-1582 |
publishDate |
2017-01-01 |
description |
In this work, we propose a diffusion MRI protocol for mining Parkinson's disease diffusion MRI datasets and recover robust disease-specific biomarkers. Using advanced high angular resolution diffusion imaging (HARDI) crossing fiber modeling and tractography robust to partial volume effects, we automatically dissected 50 white matter (WM) fascicles. These fascicles connect deep nuclei (thalamus, putamen, pallidum) to different cortical functional areas (associative, motor, sensorimotor, limbic), basal forebrain and substantia nigra. Then, among these 50 candidate WM fascicles, only the ones that passed a test-retest reproducibility procedure qualified for further tractometry analysis. Leveraging the unique 2-timepoints test-retest Parkinson's Progression Markers Initiative (PPMI) dataset of over 600 subjects, we found statistically significant differences in tract profiles along the subcortico-cortical pathways between Parkinson's disease patients and healthy controls. In particular, significant increases in FA, apparent fiber density, tract-density and generalized FA were detected in some locations of the nigro-subthalamo-putaminal-thalamo-cortical pathway. This connection is one of the major motor circuits balancing the coordination of motor output. Detailed and quantifiable knowledge on WM fascicles in these areas is thus essential to improve the quality and outcome of Deep Brain Stimulation, and to target new WM locations for investigation. Keywords: Test-retest, Parkinson, White matter, Diffusion, MRI, Tractography, Tractometry |
url |
http://www.sciencedirect.com/science/article/pii/S2213158217301869 |
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