Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches

Eighty-one stool samples from Taiwanese were collected for analysis of the association between the gut flora and obesity. The supervised analysis showed that the most, abundant genera of bacteria in normal samples (from people with a body mass index (BMI) ≤ 24) were Bacteroides (27.7%), Prevotella (...

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Main Authors: Chih-Min Chiu, Wei-Chih Huang, Shun-Long Weng, Han-Chi Tseng, Chao Liang, Wei-Chi Wang, Ting Yang, Tzu-Ling Yang, Chen-Tsung Weng, Tzu-Hao Chang, Hsien-Da Huang
Format: Article
Language:English
Published: Hindawi Limited 2014-01-01
Series:BioMed Research International
Online Access:http://dx.doi.org/10.1155/2014/906168
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spelling doaj-92635d374af34ab382d799bb7e03284e2020-11-24T23:47:14ZengHindawi LimitedBioMed Research International2314-61332314-61412014-01-01201410.1155/2014/906168906168Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics ApproachesChih-Min Chiu0Wei-Chih Huang1Shun-Long Weng2Han-Chi Tseng3Chao Liang4Wei-Chi Wang5Ting Yang6Tzu-Ling Yang7Chen-Tsung Weng8Tzu-Hao Chang9Hsien-Da Huang10Institute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, TaiwanInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, TaiwanInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, TaiwanTseng Han-Chi General Hospital, Nantou 542, TaiwanHealth GeneTech Corporation, Taoyuan 330, TaiwanHealth GeneTech Corporation, Taoyuan 330, TaiwanInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, TaiwanInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, TaiwanHealth GeneTech Corporation, Taoyuan 330, TaiwanGraduate Institute of Biomedical Informatics, Taipei Medical University, Taipei 110, TaiwanInstitute of Bioinformatics and Systems Biology, National Chiao Tung University, Hsinchu 300, TaiwanEighty-one stool samples from Taiwanese were collected for analysis of the association between the gut flora and obesity. The supervised analysis showed that the most, abundant genera of bacteria in normal samples (from people with a body mass index (BMI) ≤ 24) were Bacteroides (27.7%), Prevotella (19.4%), Escherichia (12%), Phascolarctobacterium (3.9%), and Eubacterium (3.5%). The most abundant genera of bacteria in case samples (with a BMI ≥ 27) were Bacteroides (29%), Prevotella (21%), Escherichia (7.4%), Megamonas (5.1%), and Phascolarctobacterium (3.8%). A principal coordinate analysis (PCoA) demonstrated that normal samples were clustered more compactly than case samples. An unsupervised analysis demonstrated that bacterial communities in the gut were clustered into two main groups: N-like and OB-like groups. Remarkably, most normal samples (78%) were clustered in the N-like group, and most case samples (81%) were clustered in the OB-like group (Fisher’s P  value=1.61E-07). The results showed that bacterial communities in the gut were highly associated with obesity. This is the first study in Taiwan to investigate the association between human gut flora and obesity, and the results provide new insights into the correlation of bacteria with the rising trend in obesity.http://dx.doi.org/10.1155/2014/906168
collection DOAJ
language English
format Article
sources DOAJ
author Chih-Min Chiu
Wei-Chih Huang
Shun-Long Weng
Han-Chi Tseng
Chao Liang
Wei-Chi Wang
Ting Yang
Tzu-Ling Yang
Chen-Tsung Weng
Tzu-Hao Chang
Hsien-Da Huang
spellingShingle Chih-Min Chiu
Wei-Chih Huang
Shun-Long Weng
Han-Chi Tseng
Chao Liang
Wei-Chi Wang
Ting Yang
Tzu-Ling Yang
Chen-Tsung Weng
Tzu-Hao Chang
Hsien-Da Huang
Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches
BioMed Research International
author_facet Chih-Min Chiu
Wei-Chih Huang
Shun-Long Weng
Han-Chi Tseng
Chao Liang
Wei-Chi Wang
Ting Yang
Tzu-Ling Yang
Chen-Tsung Weng
Tzu-Hao Chang
Hsien-Da Huang
author_sort Chih-Min Chiu
title Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches
title_short Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches
title_full Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches
title_fullStr Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches
title_full_unstemmed Systematic Analysis of the Association between Gut Flora and Obesity through High-Throughput Sequencing and Bioinformatics Approaches
title_sort systematic analysis of the association between gut flora and obesity through high-throughput sequencing and bioinformatics approaches
publisher Hindawi Limited
series BioMed Research International
issn 2314-6133
2314-6141
publishDate 2014-01-01
description Eighty-one stool samples from Taiwanese were collected for analysis of the association between the gut flora and obesity. The supervised analysis showed that the most, abundant genera of bacteria in normal samples (from people with a body mass index (BMI) ≤ 24) were Bacteroides (27.7%), Prevotella (19.4%), Escherichia (12%), Phascolarctobacterium (3.9%), and Eubacterium (3.5%). The most abundant genera of bacteria in case samples (with a BMI ≥ 27) were Bacteroides (29%), Prevotella (21%), Escherichia (7.4%), Megamonas (5.1%), and Phascolarctobacterium (3.8%). A principal coordinate analysis (PCoA) demonstrated that normal samples were clustered more compactly than case samples. An unsupervised analysis demonstrated that bacterial communities in the gut were clustered into two main groups: N-like and OB-like groups. Remarkably, most normal samples (78%) were clustered in the N-like group, and most case samples (81%) were clustered in the OB-like group (Fisher’s P  value=1.61E-07). The results showed that bacterial communities in the gut were highly associated with obesity. This is the first study in Taiwan to investigate the association between human gut flora and obesity, and the results provide new insights into the correlation of bacteria with the rising trend in obesity.
url http://dx.doi.org/10.1155/2014/906168
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