Be-Breeder – an application for analysis of genomic data in plant breeding

Be-Breeder is an application directed toward genetic breeding of plants, developed through the Shiny package of the R software, which allows different phenotype and molecular (marker) analysis to be undertaken. The section for analysis of molecular data of the Be-Breeder application makes it possibl...

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Main Authors:	Filipe Inácio Matias, Italo Stefanine Correa Granato, Gabriel Dequigiovanni, Roberto Fritsche-Neto
Format:	Article
Language:	English
Published:	Brazilian Society of Plant Breeding 2016-12-01
Series:	Crop Breeding and Applied Biotechnology
Subjects:	Quality control kinship matrix genomic selection genetic diversity SNP. SNP
Online Access:	http://www.sbmp.org.br/cbab/siscbab/uploads/c8eb9792-9703-82e2.pdf

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spelling	doaj-91224e0b06fb45cf87e636599f5615802020-11-25T01:35:01ZengBrazilian Society of Plant BreedingCrop Breeding and Applied Biotechnology1518-78531518-78532016-12-01171545810.1590/1984-70332017v17n1n8Be-Breeder – an application for analysis of genomic data in plant breedingFilipe Inácio Matias0Italo Stefanine Correa Granato1Gabriel Dequigiovanni2Roberto Fritsche-Neto3 Universidade de São Paulo (USP), Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ), Departamento de Genética, Av. Pádua Dias, 11, CP 83, 13.418-900, Piracicaba, SP, Brazil Universidade de São Paulo (USP), Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ), Departamento de Genética, Av. Pádua Dias, 11, CP 83, 13.418-900, Piracicaba, SP, Brazil Universidade de São Paulo (USP), Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ), Departamento de Genética, Av. Pádua Dias, 11, CP 83, 13.418-900, Piracicaba, SP, Brazil Universidade de São Paulo (USP), Escola Superior de Agricultura “Luiz de Queiroz” (ESALQ), Departamento de Genética, Av. Pádua Dias, 11, CP 83, 13.418-900, Piracicaba, SP, BrazilBe-Breeder is an application directed toward genetic breeding of plants, developed through the Shiny package of the R software, which allows different phenotype and molecular (marker) analysis to be undertaken. The section for analysis of molecular data of the Be-Breeder application makes it possible to achieve quality control of genotyping data, to obtain genomic kinship matrices, and to analyze genomic selection, genome association, and genetic diversity in a simple manner on line. This application is available for use in a network through the site of the Allogamous Plant Breeding Laboratory of ESALQ-USP (http://www.genetica.esalq.usp.br/alogamas/R.html).http://www.sbmp.org.br/cbab/siscbab/uploads/c8eb9792-9703-82e2.pdfQuality controlkinship matrixgenomic selectiongenetic diversitySNP.SNP
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	Filipe Inácio Matias Italo Stefanine Correa Granato Gabriel Dequigiovanni Roberto Fritsche-Neto
spellingShingle	Filipe Inácio Matias Italo Stefanine Correa Granato Gabriel Dequigiovanni Roberto Fritsche-Neto Be-Breeder – an application for analysis of genomic data in plant breeding Crop Breeding and Applied Biotechnology Quality control kinship matrix genomic selection genetic diversity SNP. SNP
author_facet	Filipe Inácio Matias Italo Stefanine Correa Granato Gabriel Dequigiovanni Roberto Fritsche-Neto
author_sort	Filipe Inácio Matias
title	Be-Breeder – an application for analysis of genomic data in plant breeding
title_short	Be-Breeder – an application for analysis of genomic data in plant breeding
title_full	Be-Breeder – an application for analysis of genomic data in plant breeding
title_fullStr	Be-Breeder – an application for analysis of genomic data in plant breeding
title_full_unstemmed	Be-Breeder – an application for analysis of genomic data in plant breeding
title_sort	be-breeder – an application for analysis of genomic data in plant breeding
publisher	Brazilian Society of Plant Breeding
series	Crop Breeding and Applied Biotechnology
issn	1518-7853 1518-7853
publishDate	2016-12-01
description	Be-Breeder is an application directed toward genetic breeding of plants, developed through the Shiny package of the R software, which allows different phenotype and molecular (marker) analysis to be undertaken. The section for analysis of molecular data of the Be-Breeder application makes it possible to achieve quality control of genotyping data, to obtain genomic kinship matrices, and to analyze genomic selection, genome association, and genetic diversity in a simple manner on line. This application is available for use in a network through the site of the Allogamous Plant Breeding Laboratory of ESALQ-USP (http://www.genetica.esalq.usp.br/alogamas/R.html).
topic	Quality control kinship matrix genomic selection genetic diversity SNP. SNP
url	http://www.sbmp.org.br/cbab/siscbab/uploads/c8eb9792-9703-82e2.pdf
work_keys_str_mv	AT filipeinaciomatias bebreederanapplicationforanalysisofgenomicdatainplantbreeding AT italostefaninecorreagranato bebreederanapplicationforanalysisofgenomicdatainplantbreeding AT gabrieldequigiovanni bebreederanapplicationforanalysisofgenomicdatainplantbreeding AT robertofritscheneto bebreederanapplicationforanalysisofgenomicdatainplantbreeding
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Be-Breeder – an application for analysis of genomic data in plant breeding

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