Be-Breeder – an application for analysis of genomic data in plant breeding

Be-Breeder – an application for analysis of genomic data in plant breeding

Be-Breeder is an application directed toward genetic breeding of plants, developed through the Shiny package of the R software, which allows different phenotype and molecular (marker) analysis to be undertaken. The section for analysis of molecular data of the Be-Breeder application makes it possibl...

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Bibliographic Details
Main Authors: Filipe Inácio Matias, Italo Stefanine Correa Granato, Gabriel Dequigiovanni, Roberto Fritsche-Neto
Format: Article
Language:English
Published: Brazilian Society of Plant Breeding 2016-12-01
Series:Crop Breeding and Applied Biotechnology
Subjects:
Quality control
kinship matrix
genomic selection
genetic diversity
SNP.
SNP
Online Access:http://www.sbmp.org.br/cbab/siscbab/uploads/c8eb9792-9703-82e2.pdf
Description
Summary:Be-Breeder is an application directed toward genetic breeding of plants, developed through the Shiny package of the R software, which allows different phenotype and molecular (marker) analysis to be undertaken. The section for analysis of molecular data of the Be-Breeder application makes it possible to achieve quality control of genotyping data, to obtain genomic kinship matrices, and to analyze genomic selection, genome association, and genetic diversity in a simple manner on line. This application is available for use in a network through the site of the Allogamous Plant Breeding Laboratory of ESALQ-USP (http://www.genetica.esalq.usp.br/alogamas/R.html).
ISSN:1518-7853
1518-7853

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