Understanding evolution in Poales: Insights from Eriocaulaceae plastome.

In this study, we report the plastome of Eriocaulon decemflorum (Eriocaulaceae) and make an effort to understand the genome evolution, structural rearrangements and gene content of the order Poales by comparing it with other available plastomes. The size of complete E. decemflorum plastome is 151,67...

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Main Authors: Ashwini M Darshetkar, Mandar N Datar, Shubhada Tamhankar, Pan Li, Ritesh Kumar Choudhary
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2019-01-01
Series:PLoS ONE
Online Access:https://doi.org/10.1371/journal.pone.0221423
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spelling doaj-8f3472144cd14a34ac98c7e6335da3fe2021-03-03T21:21:54ZengPublic Library of Science (PLoS)PLoS ONE1932-62032019-01-01148e022142310.1371/journal.pone.0221423Understanding evolution in Poales: Insights from Eriocaulaceae plastome.Ashwini M DarshetkarMandar N DatarShubhada TamhankarPan LiRitesh Kumar ChoudharyIn this study, we report the plastome of Eriocaulon decemflorum (Eriocaulaceae) and make an effort to understand the genome evolution, structural rearrangements and gene content of the order Poales by comparing it with other available plastomes. The size of complete E. decemflorum plastome is 151,671 bp with an LSC (81,477bp), SSC (17,180bp) and a pair of IRs (26,507 bp). The plastome exhibits GC content of 35.8% and 134 protein-coding genes with 19 genes duplicated in the IR region. The Eriocaulaceae plastome is characterized by the presence of accD, ycf1 and ycf2 genes and presence of introns in clpP and rpoC1 genes which have been lost in the Graminid plastomes. Phylogenomic analysis based on 81 protein-coding genes placed Eriocaulaceae sister to Mayacaceae. The present study enhances our understanding of the evolution of Poales by analyzing the plastome data from the order.https://doi.org/10.1371/journal.pone.0221423
collection DOAJ
language English
format Article
sources DOAJ
author Ashwini M Darshetkar
Mandar N Datar
Shubhada Tamhankar
Pan Li
Ritesh Kumar Choudhary
spellingShingle Ashwini M Darshetkar
Mandar N Datar
Shubhada Tamhankar
Pan Li
Ritesh Kumar Choudhary
Understanding evolution in Poales: Insights from Eriocaulaceae plastome.
PLoS ONE
author_facet Ashwini M Darshetkar
Mandar N Datar
Shubhada Tamhankar
Pan Li
Ritesh Kumar Choudhary
author_sort Ashwini M Darshetkar
title Understanding evolution in Poales: Insights from Eriocaulaceae plastome.
title_short Understanding evolution in Poales: Insights from Eriocaulaceae plastome.
title_full Understanding evolution in Poales: Insights from Eriocaulaceae plastome.
title_fullStr Understanding evolution in Poales: Insights from Eriocaulaceae plastome.
title_full_unstemmed Understanding evolution in Poales: Insights from Eriocaulaceae plastome.
title_sort understanding evolution in poales: insights from eriocaulaceae plastome.
publisher Public Library of Science (PLoS)
series PLoS ONE
issn 1932-6203
publishDate 2019-01-01
description In this study, we report the plastome of Eriocaulon decemflorum (Eriocaulaceae) and make an effort to understand the genome evolution, structural rearrangements and gene content of the order Poales by comparing it with other available plastomes. The size of complete E. decemflorum plastome is 151,671 bp with an LSC (81,477bp), SSC (17,180bp) and a pair of IRs (26,507 bp). The plastome exhibits GC content of 35.8% and 134 protein-coding genes with 19 genes duplicated in the IR region. The Eriocaulaceae plastome is characterized by the presence of accD, ycf1 and ycf2 genes and presence of introns in clpP and rpoC1 genes which have been lost in the Graminid plastomes. Phylogenomic analysis based on 81 protein-coding genes placed Eriocaulaceae sister to Mayacaceae. The present study enhances our understanding of the evolution of Poales by analyzing the plastome data from the order.
url https://doi.org/10.1371/journal.pone.0221423
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