GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping

Microbe plays an important role in driving biogeochemical cycles, thus it is of great interest to understand microbial responses and feedbacks to global changes. We have recently analyzed functional potentials of soil microbial community via a high-throughput, microarray-based metagenomic tool named...

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Main Authors:	Mengxin Zhao, Feng Wang, Shanshan Liu, Kai Xue, Yuting Liang, Shijie Bai, Zhili He, Joy D. Van Nostrand, Jizhong Zhou, Yunfeng Yang, Bo Sun
Format:	Article
Language:	English
Published:	Elsevier 2014-12-01
Series:	Genomics Data
Subjects:	GeoChip3.0 Soil transplant Maize cropping Functional gene Climate change
Online Access:	http://www.sciencedirect.com/science/article/pii/S221359601400035X

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spelling	doaj-8e2f873c70354d589f11e227b86ad9a12020-11-25T02:12:31ZengElsevierGenomics Data2213-59602014-12-012C16616910.1016/j.gdata.2014.06.002GeoChip profiling of microbial community in response to global changes simulated by soil transplant and croppingMengxin Zhao0Feng Wang1Shanshan Liu2Kai Xue3Yuting Liang4Shijie Bai5Zhili He6Joy D. Van Nostrand7Jizhong Zhou8Yunfeng Yang9Bo Sun10State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, ChinaState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, ChinaState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, ChinaInstitute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019, USAState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, ChinaInstitute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019, USAInstitute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019, USAInstitute for Environmental Genomics, Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK 73019, USAState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, ChinaState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing 100084, ChinaState Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, ChinaMicrobe plays an important role in driving biogeochemical cycles, thus it is of great interest to understand microbial responses and feedbacks to global changes. We have recently analyzed functional potentials of soil microbial community via a high-throughput, microarray-based metagenomic tool named GeoChip 3.0 to illustrate microbial responses to global changes simulated by soil transplant and/or maize cropping. Here we describe detailed experimental design, data collection and pre-processing to support our published studies by Liu et al. [5] and Zhao et al. [14].http://www.sciencedirect.com/science/article/pii/S221359601400035XGeoChip3.0Soil transplantMaize croppingFunctional geneClimate change
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	Mengxin Zhao Feng Wang Shanshan Liu Kai Xue Yuting Liang Shijie Bai Zhili He Joy D. Van Nostrand Jizhong Zhou Yunfeng Yang Bo Sun
spellingShingle	Mengxin Zhao Feng Wang Shanshan Liu Kai Xue Yuting Liang Shijie Bai Zhili He Joy D. Van Nostrand Jizhong Zhou Yunfeng Yang Bo Sun GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping Genomics Data GeoChip3.0 Soil transplant Maize cropping Functional gene Climate change
author_facet	Mengxin Zhao Feng Wang Shanshan Liu Kai Xue Yuting Liang Shijie Bai Zhili He Joy D. Van Nostrand Jizhong Zhou Yunfeng Yang Bo Sun
author_sort	Mengxin Zhao
title	GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping
title_short	GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping
title_full	GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping
title_fullStr	GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping
title_full_unstemmed	GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping
title_sort	geochip profiling of microbial community in response to global changes simulated by soil transplant and cropping
publisher	Elsevier
series	Genomics Data
issn	2213-5960
publishDate	2014-12-01
description	Microbe plays an important role in driving biogeochemical cycles, thus it is of great interest to understand microbial responses and feedbacks to global changes. We have recently analyzed functional potentials of soil microbial community via a high-throughput, microarray-based metagenomic tool named GeoChip 3.0 to illustrate microbial responses to global changes simulated by soil transplant and/or maize cropping. Here we describe detailed experimental design, data collection and pre-processing to support our published studies by Liu et al. [5] and Zhao et al. [14].
topic	GeoChip3.0 Soil transplant Maize cropping Functional gene Climate change
url	http://www.sciencedirect.com/science/article/pii/S221359601400035X
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GeoChip profiling of microbial community in response to global changes simulated by soil transplant and cropping

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