Local Packing Density Is the Main Structural Determinant of the Rate of Protein Sequence Evolution at Site Level
Functional and biophysical constraints result in site-dependent patterns of protein sequence variability. It is commonly assumed that the key structural determinant of site-specific rates of evolution is the Relative Solvent Accessibility (RSA). However, a recent study found that amino acid substitu...
Main Authors: | So-Wei Yeh, Tsun-Tsao Huang, Jen-Wei Liu, Sung-Huan Yu, Chien-Hua Shih, Jenn-Kang Hwang, Julian Echave |
---|---|
Format: | Article |
Language: | English |
Published: |
Hindawi Limited
2014-01-01
|
Series: | BioMed Research International |
Online Access: | http://dx.doi.org/10.1155/2014/572409 |
Similar Items
-
Sequence Conservation, Radial Distance and Packing Density in Spherical Viral Capsids.
by: Chih-Min Chang, et al.
Published: (2015-01-01) -
Too packed to change: side-chain packing and site-specific substitution rates in protein evolution
by: María Laura Marcos, et al.
Published: (2015-04-01) -
A Residue Packing Density Model on Protein Dynamics and Sequence Fluctuations.
by: Yen, Shih-Chung, et al.
Published: (2017) -
Effects of Mixing Ratio of Binary Fine Particles on the Packing Density and Filtration Characteristics
by: Kuo-Jen Hwang, et al.
Published: (2015-09-01) -
The structurally constrained protein evolution model accounts for sequence patterns of the LβH superfamily
by: Echave Julián, et al.
Published: (2004-10-01)