Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize
The South African quality protein maize (QPM) cultivars have the desired high lysine content and kernel hardness due to o2 mutation and the introgression of modifiers of o2 (Mo2) QTLs, respectively. Here, the authors assemble the genome of a QPM line and identify candidate genes underlying Mo2 QTLs.
| Main Authors: | , , , , , , , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Nature Publishing Group
2020-01-01
|
| Series: | Nature Communications |
| Online Access: | https://doi.org/10.1038/s41467-019-14023-2 |
| id |
doaj-8847034ce8a548a7b775b88f26cc55ac |
|---|---|
| record_format |
Article |
| spelling |
doaj-8847034ce8a548a7b775b88f26cc55ac2021-05-11T08:06:25ZengNature Publishing GroupNature Communications2041-17232020-01-0111111110.1038/s41467-019-14023-2Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maizeChangsheng Li0Xiaoli Xiang1Yongcai Huang2Yong Zhou3Dong An4Jiaqiang Dong5Chenxi Zhao6Hongjun Liu7Yubin Li8Qiong Wang9Chunguang Du10Joachim Messing11Brian A. Larkins12Yongrui Wu13Wenqin Wang14School of Agriculture and Biology, Shanghai Jiao Tong UniversityNational Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology & Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of SciencesNational Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology & Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of SciencesNational Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology & Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of SciencesSchool of Agriculture and Biology, Shanghai Jiao Tong UniversityWaksman Institute of Microbiology, Rutgers UniversityBGI Education Center, University of Chinese Academy of SciencesState Key Laboratory of Crop Biology, College of Life Sciences, Shandong Agricultural UniversityCollege of Agronomy, Qingdao Agricultural UniversityNational Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology & Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of SciencesDepartment of Biology, Montclair State UniversityWaksman Institute of Microbiology, Rutgers UniversitySchool of Plant Sciences, University of ArizonaNational Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology & Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of SciencesSchool of Agriculture and Biology, Shanghai Jiao Tong UniversityThe South African quality protein maize (QPM) cultivars have the desired high lysine content and kernel hardness due to o2 mutation and the introgression of modifiers of o2 (Mo2) QTLs, respectively. Here, the authors assemble the genome of a QPM line and identify candidate genes underlying Mo2 QTLs.https://doi.org/10.1038/s41467-019-14023-2 |
| collection |
DOAJ |
| language |
English |
| format |
Article |
| sources |
DOAJ |
| author |
Changsheng Li Xiaoli Xiang Yongcai Huang Yong Zhou Dong An Jiaqiang Dong Chenxi Zhao Hongjun Liu Yubin Li Qiong Wang Chunguang Du Joachim Messing Brian A. Larkins Yongrui Wu Wenqin Wang |
| spellingShingle |
Changsheng Li Xiaoli Xiang Yongcai Huang Yong Zhou Dong An Jiaqiang Dong Chenxi Zhao Hongjun Liu Yubin Li Qiong Wang Chunguang Du Joachim Messing Brian A. Larkins Yongrui Wu Wenqin Wang Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize Nature Communications |
| author_facet |
Changsheng Li Xiaoli Xiang Yongcai Huang Yong Zhou Dong An Jiaqiang Dong Chenxi Zhao Hongjun Liu Yubin Li Qiong Wang Chunguang Du Joachim Messing Brian A. Larkins Yongrui Wu Wenqin Wang |
| author_sort |
Changsheng Li |
| title |
Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize |
| title_short |
Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize |
| title_full |
Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize |
| title_fullStr |
Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize |
| title_full_unstemmed |
Long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize |
| title_sort |
long-read sequencing reveals genomic structural variations that underlie creation of quality protein maize |
| publisher |
Nature Publishing Group |
| series |
Nature Communications |
| issn |
2041-1723 |
| publishDate |
2020-01-01 |
| description |
The South African quality protein maize (QPM) cultivars have the desired high lysine content and kernel hardness due to o2 mutation and the introgression of modifiers of o2 (Mo2) QTLs, respectively. Here, the authors assemble the genome of a QPM line and identify candidate genes underlying Mo2 QTLs. |
| url |
https://doi.org/10.1038/s41467-019-14023-2 |
| work_keys_str_mv |
AT changshengli longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT xiaolixiang longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT yongcaihuang longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT yongzhou longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT dongan longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT jiaqiangdong longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT chenxizhao longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT hongjunliu longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT yubinli longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT qiongwang longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT chunguangdu longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT joachimmessing longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT brianalarkins longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT yongruiwu longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize AT wenqinwang longreadsequencingrevealsgenomicstructuralvariationsthatunderliecreationofqualityproteinmaize |
| _version_ |
1721451173876072448 |