aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data

Anatomical segmentation of high-resolution 3D microscopy datasets is necessary to map large samples at cellular resolution. Here the authors present a pipeline for automated mouse atlas propagation (aMAP) to segment fluorescence images of the adult mouse brain and validate it against human segmentat...

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Main Authors:	Christian J. Niedworok, Alexander P. Y. Brown, M. Jorge Cardoso, Pavel Osten, Sebastien Ourselin, Marc Modat, Troy W. Margrie
Format:	Article
Language:	English
Published:	Nature Publishing Group 2016-07-01
Series:	Nature Communications
Online Access:	https://doi.org/10.1038/ncomms11879

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spelling	doaj-84dc07594c574017bccfa315fa0d6d5f2021-05-11T10:52:28ZengNature Publishing GroupNature Communications2041-17232016-07-01711910.1038/ncomms11879aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain dataChristian J. Niedworok0Alexander P. Y. Brown1M. Jorge Cardoso2Pavel Osten3Sebastien Ourselin4Marc Modat5Troy W. Margrie6The Division of Neurophysiology, MRC National Institute for Medical ResearchThe Division of Neurophysiology, MRC National Institute for Medical ResearchTranslational Imaging Group, Centre for Medical Image Computing, University College LondonCold Spring Harbor LaboratoryTranslational Imaging Group, Centre for Medical Image Computing, University College LondonTranslational Imaging Group, Centre for Medical Image Computing, University College LondonThe Division of Neurophysiology, MRC National Institute for Medical ResearchAnatomical segmentation of high-resolution 3D microscopy datasets is necessary to map large samples at cellular resolution. Here the authors present a pipeline for automated mouse atlas propagation (aMAP) to segment fluorescence images of the adult mouse brain and validate it against human segmentations.https://doi.org/10.1038/ncomms11879
collection	DOAJ
language	English
format	Article
sources	DOAJ
author	Christian J. Niedworok Alexander P. Y. Brown M. Jorge Cardoso Pavel Osten Sebastien Ourselin Marc Modat Troy W. Margrie
spellingShingle	Christian J. Niedworok Alexander P. Y. Brown M. Jorge Cardoso Pavel Osten Sebastien Ourselin Marc Modat Troy W. Margrie aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data Nature Communications
author_facet	Christian J. Niedworok Alexander P. Y. Brown M. Jorge Cardoso Pavel Osten Sebastien Ourselin Marc Modat Troy W. Margrie
author_sort	Christian J. Niedworok
title	aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
title_short	aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
title_full	aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
title_fullStr	aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
title_full_unstemmed	aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
title_sort	amap is a validated pipeline for registration and segmentation of high-resolution mouse brain data
publisher	Nature Publishing Group
series	Nature Communications
issn	2041-1723
publishDate	2016-07-01
description	Anatomical segmentation of high-resolution 3D microscopy datasets is necessary to map large samples at cellular resolution. Here the authors present a pipeline for automated mouse atlas propagation (aMAP) to segment fluorescence images of the adult mouse brain and validate it against human segmentations.
url	https://doi.org/10.1038/ncomms11879
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aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data

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