Analysis of COSIMA spectra: Bayesian approach

We describe the use of Bayesian analysis methods applied to time-of-flight secondary ion mass spectrometer (TOF-SIMS) spectra. The method is applied to the COmetary Secondary Ion Mass Analyzer (COSIMA) TOF-SIMS mass spectra where the analysis can be broken into subgroups of lines close to inte...

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Main Authors: H. J. Lehto, B. Zaprudin, K. M. Lehto, T. Lönnberg, J. Silén, J. Rynö, H. Krüger, M. Hilchenbach, J. Kissel
Format: Article
Language:English
Published: Copernicus Publications 2015-06-01
Series:Geoscientific Instrumentation, Methods and Data Systems
Online Access:http://www.geosci-instrum-method-data-syst.net/4/139/2015/gi-4-139-2015.pdf
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spelling doaj-84b5ce2c6dfa458bad930a05c62386e02020-11-24T21:57:50ZengCopernicus PublicationsGeoscientific Instrumentation, Methods and Data Systems2193-08562193-08642015-06-014113914810.5194/gi-4-139-2015Analysis of COSIMA spectra: Bayesian approachH. J. Lehto0B. Zaprudin1K. M. Lehto2T. Lönnberg3J. Silén4J. Rynö5H. Krüger6M. Hilchenbach7J. Kissel8Tuorla Observatory, Department of Physics and Astronomy, University of Turku, Väisäläntie 20, 21500 Piikkiö, FinlandTuorla Observatory, Department of Physics and Astronomy, University of Turku, Väisäläntie 20, 21500 Piikkiö, FinlandMolecular Plant Biology, Department of Biochemistry, University of Turku, 20014 Turku, FinlandOrganic Chemistry, Department of Chemistry, University of Turku, 20014 Turku, FinlandFinnish Meteorological Institute, Erik Palmenin aukio 1, PB 503, 00101 Helsinki, FinlandFinnish Meteorological Institute, Erik Palmenin aukio 1, PB 503, 00101 Helsinki, FinlandMax Planck Institute for Solar System Research, Justus-von-Liebig-Weg 3, 37077 Göttingen, GermanyMax Planck Institute for Solar System Research, Justus-von-Liebig-Weg 3, 37077 Göttingen, GermanyMax Planck Institute for Solar System Research, Justus-von-Liebig-Weg 3, 37077 Göttingen, GermanyWe describe the use of Bayesian analysis methods applied to time-of-flight secondary ion mass spectrometer (TOF-SIMS) spectra. The method is applied to the COmetary Secondary Ion Mass Analyzer (COSIMA) TOF-SIMS mass spectra where the analysis can be broken into subgroups of lines close to integer mass values. The effects of the instrumental dead time are discussed in a new way. The method finds the joint probability density functions of measured line parameters (number of lines, and their widths, peak amplitudes, integrated amplitudes and positions). In the case of two or more lines, these distributions can take complex forms. The derived line parameters can be used to further calibrate the mass scaling of TOF-SIMS and to feed the results into other analysis methods such as multivariate analyses of spectra. We intend to use the method, first as a comprehensive tool to perform quantitative analysis of spectra, and second as a fast tool for studying interesting targets for obtaining additional TOF-SIMS measurements of the sample, a property unique to COSIMA. Finally, we point out that the Bayesian method can be thought of as a means to solve inverse problems but with forward calculations, only with no iterative corrections or other manipulation of the observed data.http://www.geosci-instrum-method-data-syst.net/4/139/2015/gi-4-139-2015.pdf
collection DOAJ
language English
format Article
sources DOAJ
author H. J. Lehto
B. Zaprudin
K. M. Lehto
T. Lönnberg
J. Silén
J. Rynö
H. Krüger
M. Hilchenbach
J. Kissel
spellingShingle H. J. Lehto
B. Zaprudin
K. M. Lehto
T. Lönnberg
J. Silén
J. Rynö
H. Krüger
M. Hilchenbach
J. Kissel
Analysis of COSIMA spectra: Bayesian approach
Geoscientific Instrumentation, Methods and Data Systems
author_facet H. J. Lehto
B. Zaprudin
K. M. Lehto
T. Lönnberg
J. Silén
J. Rynö
H. Krüger
M. Hilchenbach
J. Kissel
author_sort H. J. Lehto
title Analysis of COSIMA spectra: Bayesian approach
title_short Analysis of COSIMA spectra: Bayesian approach
title_full Analysis of COSIMA spectra: Bayesian approach
title_fullStr Analysis of COSIMA spectra: Bayesian approach
title_full_unstemmed Analysis of COSIMA spectra: Bayesian approach
title_sort analysis of cosima spectra: bayesian approach
publisher Copernicus Publications
series Geoscientific Instrumentation, Methods and Data Systems
issn 2193-0856
2193-0864
publishDate 2015-06-01
description We describe the use of Bayesian analysis methods applied to time-of-flight secondary ion mass spectrometer (TOF-SIMS) spectra. The method is applied to the COmetary Secondary Ion Mass Analyzer (COSIMA) TOF-SIMS mass spectra where the analysis can be broken into subgroups of lines close to integer mass values. The effects of the instrumental dead time are discussed in a new way. The method finds the joint probability density functions of measured line parameters (number of lines, and their widths, peak amplitudes, integrated amplitudes and positions). In the case of two or more lines, these distributions can take complex forms. The derived line parameters can be used to further calibrate the mass scaling of TOF-SIMS and to feed the results into other analysis methods such as multivariate analyses of spectra. We intend to use the method, first as a comprehensive tool to perform quantitative analysis of spectra, and second as a fast tool for studying interesting targets for obtaining additional TOF-SIMS measurements of the sample, a property unique to COSIMA. Finally, we point out that the Bayesian method can be thought of as a means to solve inverse problems but with forward calculations, only with no iterative corrections or other manipulation of the observed data.
url http://www.geosci-instrum-method-data-syst.net/4/139/2015/gi-4-139-2015.pdf
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