Analysis of COSIMA spectra: Bayesian approach
We describe the use of Bayesian analysis methods applied to time-of-flight secondary ion mass spectrometer (TOF-SIMS) spectra. The method is applied to the COmetary Secondary Ion Mass Analyzer (COSIMA) TOF-SIMS mass spectra where the analysis can be broken into subgroups of lines close to inte...
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doaj-84b5ce2c6dfa458bad930a05c62386e02020-11-24T21:57:50ZengCopernicus PublicationsGeoscientific Instrumentation, Methods and Data Systems2193-08562193-08642015-06-014113914810.5194/gi-4-139-2015Analysis of COSIMA spectra: Bayesian approachH. J. Lehto0B. Zaprudin1K. M. Lehto2T. Lönnberg3J. Silén4J. Rynö5H. Krüger6M. Hilchenbach7J. Kissel8Tuorla Observatory, Department of Physics and Astronomy, University of Turku, Väisäläntie 20, 21500 Piikkiö, FinlandTuorla Observatory, Department of Physics and Astronomy, University of Turku, Väisäläntie 20, 21500 Piikkiö, FinlandMolecular Plant Biology, Department of Biochemistry, University of Turku, 20014 Turku, FinlandOrganic Chemistry, Department of Chemistry, University of Turku, 20014 Turku, FinlandFinnish Meteorological Institute, Erik Palmenin aukio 1, PB 503, 00101 Helsinki, FinlandFinnish Meteorological Institute, Erik Palmenin aukio 1, PB 503, 00101 Helsinki, FinlandMax Planck Institute for Solar System Research, Justus-von-Liebig-Weg 3, 37077 Göttingen, GermanyMax Planck Institute for Solar System Research, Justus-von-Liebig-Weg 3, 37077 Göttingen, GermanyMax Planck Institute for Solar System Research, Justus-von-Liebig-Weg 3, 37077 Göttingen, GermanyWe describe the use of Bayesian analysis methods applied to time-of-flight secondary ion mass spectrometer (TOF-SIMS) spectra. The method is applied to the COmetary Secondary Ion Mass Analyzer (COSIMA) TOF-SIMS mass spectra where the analysis can be broken into subgroups of lines close to integer mass values. The effects of the instrumental dead time are discussed in a new way. The method finds the joint probability density functions of measured line parameters (number of lines, and their widths, peak amplitudes, integrated amplitudes and positions). In the case of two or more lines, these distributions can take complex forms. The derived line parameters can be used to further calibrate the mass scaling of TOF-SIMS and to feed the results into other analysis methods such as multivariate analyses of spectra. We intend to use the method, first as a comprehensive tool to perform quantitative analysis of spectra, and second as a fast tool for studying interesting targets for obtaining additional TOF-SIMS measurements of the sample, a property unique to COSIMA. Finally, we point out that the Bayesian method can be thought of as a means to solve inverse problems but with forward calculations, only with no iterative corrections or other manipulation of the observed data.http://www.geosci-instrum-method-data-syst.net/4/139/2015/gi-4-139-2015.pdf |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
H. J. Lehto B. Zaprudin K. M. Lehto T. Lönnberg J. Silén J. Rynö H. Krüger M. Hilchenbach J. Kissel |
spellingShingle |
H. J. Lehto B. Zaprudin K. M. Lehto T. Lönnberg J. Silén J. Rynö H. Krüger M. Hilchenbach J. Kissel Analysis of COSIMA spectra: Bayesian approach Geoscientific Instrumentation, Methods and Data Systems |
author_facet |
H. J. Lehto B. Zaprudin K. M. Lehto T. Lönnberg J. Silén J. Rynö H. Krüger M. Hilchenbach J. Kissel |
author_sort |
H. J. Lehto |
title |
Analysis of COSIMA spectra: Bayesian approach |
title_short |
Analysis of COSIMA spectra: Bayesian approach |
title_full |
Analysis of COSIMA spectra: Bayesian approach |
title_fullStr |
Analysis of COSIMA spectra: Bayesian approach |
title_full_unstemmed |
Analysis of COSIMA spectra: Bayesian approach |
title_sort |
analysis of cosima spectra: bayesian approach |
publisher |
Copernicus Publications |
series |
Geoscientific Instrumentation, Methods and Data Systems |
issn |
2193-0856 2193-0864 |
publishDate |
2015-06-01 |
description |
We describe the use of Bayesian analysis methods applied to time-of-flight
secondary ion mass spectrometer (TOF-SIMS)
spectra. The method is applied to the COmetary Secondary Ion Mass Analyzer (COSIMA) TOF-SIMS mass spectra
where the analysis can be broken into subgroups of lines close to
integer mass values. The effects of the instrumental dead time are discussed
in a new way. The method finds the joint probability density functions of
measured line parameters (number of lines, and their widths, peak
amplitudes, integrated amplitudes and positions). In the case of two or
more lines, these distributions can take complex forms. The derived
line parameters can be used to further calibrate the mass scaling
of TOF-SIMS and to feed the results into other analysis methods such
as multivariate analyses of spectra. We intend to use the method,
first as a comprehensive tool to perform quantitative
analysis of spectra, and second as a fast tool for studying
interesting targets for obtaining additional TOF-SIMS measurements
of the sample, a property unique to COSIMA. Finally, we point out
that the Bayesian method can be thought of as a means to solve inverse
problems but with forward calculations, only with no
iterative corrections or other manipulation of the observed data. |
url |
http://www.geosci-instrum-method-data-syst.net/4/139/2015/gi-4-139-2015.pdf |
work_keys_str_mv |
AT hjlehto analysisofcosimaspectrabayesianapproach AT bzaprudin analysisofcosimaspectrabayesianapproach AT kmlehto analysisofcosimaspectrabayesianapproach AT tlonnberg analysisofcosimaspectrabayesianapproach AT jsilen analysisofcosimaspectrabayesianapproach AT jryno analysisofcosimaspectrabayesianapproach AT hkruger analysisofcosimaspectrabayesianapproach AT mhilchenbach analysisofcosimaspectrabayesianapproach AT jkissel analysisofcosimaspectrabayesianapproach |
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