Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico

Palm wine is obtained by fermentation of palm tree sap. In the Pacific coast of Mexico, palm wine is called Tuba and it is consumed as a traditional fermented beverage. Tuba has empirical applications such as an auxiliary in gastrointestinal diseases and a good source of nutrients. In the present st...

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Main Authors: Fernando Astudillo-Melgar, Adrián Ochoa-Leyva, José Utrilla, Gerardo Huerta-Beristain
Format: Article
Language:English
Published: Frontiers Media S.A. 2019-03-01
Series:Frontiers in Microbiology
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/fmicb.2019.00531/full
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spelling doaj-82701a68eb9242d38a407d5a435c9d712020-11-24T21:20:54ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2019-03-011010.3389/fmicb.2019.00531441468Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero MexicoFernando Astudillo-Melgar0Fernando Astudillo-Melgar1Adrián Ochoa-Leyva2José Utrilla3Gerardo Huerta-Beristain4Laboratorio de Investigación en Biotecnología, Universidad Autónoma de Guerrero, Chilpancingo, MexicoPrograma de Biología de Sistemas y Biología Sintética, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, MexicoDepartamento de Microbiología Molecular, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, MexicoPrograma de Biología de Sistemas y Biología Sintética, Centro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, MexicoLaboratorio de Investigación en Biotecnología, Universidad Autónoma de Guerrero, Chilpancingo, MexicoPalm wine is obtained by fermentation of palm tree sap. In the Pacific coast of Mexico, palm wine is called Tuba and it is consumed as a traditional fermented beverage. Tuba has empirical applications such as an auxiliary in gastrointestinal diseases and a good source of nutrients. In the present study, a next-generation sequencing of the V3–V4 regions of the 16S rRNA gene was employed to analyze bacterial diversity and population dynamics during the fermentation process of Tuba, both in laboratory controlled conditions and in commercial samples from local vendors. Taxonomic identification showed that Fructobacillus was the main genus in all the samples, following by Leuconostoc, Gluconacetobacter, Sphingomonas, and Vibrio. Alpha diversity analysis demonstrated variability between all the samples. Beta diversity clustered the bacterial population according to the collection origin of the sample. Metabolic functional profile inference showed that the members of the bacterial communities may present the vitamin, antibiotic and antioxidant biosynthesis genes. Additionally, we further investigated the correlation between the predominant genera and some composition parameters of this beverage. This study provides the basis of the bacterial community composition and functionality of the fermented beverage.https://www.frontiersin.org/article/10.3389/fmicb.2019.00531/fullTubafermented beveragebacterial diversityfunctionalitymassive sequencing
collection DOAJ
language English
format Article
sources DOAJ
author Fernando Astudillo-Melgar
Fernando Astudillo-Melgar
Adrián Ochoa-Leyva
José Utrilla
Gerardo Huerta-Beristain
spellingShingle Fernando Astudillo-Melgar
Fernando Astudillo-Melgar
Adrián Ochoa-Leyva
José Utrilla
Gerardo Huerta-Beristain
Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
Frontiers in Microbiology
Tuba
fermented beverage
bacterial diversity
functionality
massive sequencing
author_facet Fernando Astudillo-Melgar
Fernando Astudillo-Melgar
Adrián Ochoa-Leyva
José Utrilla
Gerardo Huerta-Beristain
author_sort Fernando Astudillo-Melgar
title Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
title_short Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
title_full Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
title_fullStr Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
title_full_unstemmed Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico
title_sort bacterial diversity and population dynamics during the fermentation of palm wine from guerrero mexico
publisher Frontiers Media S.A.
series Frontiers in Microbiology
issn 1664-302X
publishDate 2019-03-01
description Palm wine is obtained by fermentation of palm tree sap. In the Pacific coast of Mexico, palm wine is called Tuba and it is consumed as a traditional fermented beverage. Tuba has empirical applications such as an auxiliary in gastrointestinal diseases and a good source of nutrients. In the present study, a next-generation sequencing of the V3–V4 regions of the 16S rRNA gene was employed to analyze bacterial diversity and population dynamics during the fermentation process of Tuba, both in laboratory controlled conditions and in commercial samples from local vendors. Taxonomic identification showed that Fructobacillus was the main genus in all the samples, following by Leuconostoc, Gluconacetobacter, Sphingomonas, and Vibrio. Alpha diversity analysis demonstrated variability between all the samples. Beta diversity clustered the bacterial population according to the collection origin of the sample. Metabolic functional profile inference showed that the members of the bacterial communities may present the vitamin, antibiotic and antioxidant biosynthesis genes. Additionally, we further investigated the correlation between the predominant genera and some composition parameters of this beverage. This study provides the basis of the bacterial community composition and functionality of the fermented beverage.
topic Tuba
fermented beverage
bacterial diversity
functionality
massive sequencing
url https://www.frontiersin.org/article/10.3389/fmicb.2019.00531/full
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