A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in Colombia

Agricultural activity has always been threatened by the presence of pests and diseases that prevent the proper development of crops and negatively affect the economy of farmers. One of these pests is Coffee Leaf Rust (CLR), which is a fungal epidemic disease that affects coffee trees and causes mass...

Full description

Bibliographic Details
Main Authors: David Velásquez, Alejandro Sánchez, Sebastian Sarmiento, Mauricio Toro, Mikel Maiza, Basilio Sierra
Format: Article
Language:English
Published: MDPI AG 2020-01-01
Series:Applied Sciences
Subjects:
Online Access:https://www.mdpi.com/2076-3417/10/2/697
id doaj-81101c6eb7914ffab6f23ddf99013131
record_format Article
spelling doaj-81101c6eb7914ffab6f23ddf990131312020-11-25T01:42:38ZengMDPI AGApplied Sciences2076-34172020-01-0110269710.3390/app10020697app10020697A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in ColombiaDavid Velásquez0Alejandro Sánchez1Sebastian Sarmiento2Mauricio Toro3Mikel Maiza4Basilio Sierra5I+D+i on Information Technologies and Communications Research Group, Universidad EAFIT, Carrera 49 No. 7 Sur - 50, Medellín 050022, ColombiaI+D+i on Information Technologies and Communications Research Group, Universidad EAFIT, Carrera 49 No. 7 Sur - 50, Medellín 050022, ColombiaI+D+i on Information Technologies and Communications Research Group, Universidad EAFIT, Carrera 49 No. 7 Sur - 50, Medellín 050022, ColombiaI+D+i on Information Technologies and Communications Research Group, Universidad EAFIT, Carrera 49 No. 7 Sur - 50, Medellín 050022, ColombiaDepartment of Data Intelligence for Energy and Industrial Processes, Vicomtech Foundation, Basque Research and Technology Alliance (BRTA), 20014 Donostia-San Sebastián, SpainDepartment of Computer Science and Artificial Intelligence, University of Basque Country, Manuel Lardizabal Ibilbidea, 1, 20018 Donostia/San Sebastián, SpainAgricultural activity has always been threatened by the presence of pests and diseases that prevent the proper development of crops and negatively affect the economy of farmers. One of these pests is Coffee Leaf Rust (CLR), which is a fungal epidemic disease that affects coffee trees and causes massive defoliation. As an example, this disease has been affecting coffee trees in Colombia (the third largest producer of coffee worldwide) since the 1980s, leading to devastating losses between 70% and 80% of the harvest. Failure to detect pathogens at an early stage can result in infestations that cause massive destruction of plantations and significantly damage the commercial value of the products. The most common way to detect this disease is by walking through the crop and performing a human visual inspection. As a result of this problem, different research studies have proven that technological methods can help to identify these pathogens. Our contribution is an experiment that includes a CLR development stage diagnostic model in the <i>Coffea arabica</i>, Caturra variety, scale crop through the technological integration of remote sensing (through drone capable multispectral cameras), wireless sensor networks (multisensor approach), and Deep Learning (DL) techniques. Our diagnostic model achieved an <i>F</i><sub>1</sub>-score of 0.775. The analysis of the results revealed a <i>p</i>-value of 0.231, which indicated that the difference between the disease diagnosis made employing a visual inspection and through the proposed technological integration was not statistically significant. The above shows that both methods were significantly similar to diagnose the disease.https://www.mdpi.com/2076-3417/10/2/697coffee leaf rustmachine learningdeep learningremote sensingfourth industrial revolutionagriculture 4.0
collection DOAJ
language English
format Article
sources DOAJ
author David Velásquez
Alejandro Sánchez
Sebastian Sarmiento
Mauricio Toro
Mikel Maiza
Basilio Sierra
spellingShingle David Velásquez
Alejandro Sánchez
Sebastian Sarmiento
Mauricio Toro
Mikel Maiza
Basilio Sierra
A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in Colombia
Applied Sciences
coffee leaf rust
machine learning
deep learning
remote sensing
fourth industrial revolution
agriculture 4.0
author_facet David Velásquez
Alejandro Sánchez
Sebastian Sarmiento
Mauricio Toro
Mikel Maiza
Basilio Sierra
author_sort David Velásquez
title A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in Colombia
title_short A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in Colombia
title_full A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in Colombia
title_fullStr A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in Colombia
title_full_unstemmed A Method for Detecting Coffee Leaf Rust through Wireless Sensor Networks, Remote Sensing, and Deep Learning: Case Study of the Caturra Variety in Colombia
title_sort method for detecting coffee leaf rust through wireless sensor networks, remote sensing, and deep learning: case study of the caturra variety in colombia
publisher MDPI AG
series Applied Sciences
issn 2076-3417
publishDate 2020-01-01
description Agricultural activity has always been threatened by the presence of pests and diseases that prevent the proper development of crops and negatively affect the economy of farmers. One of these pests is Coffee Leaf Rust (CLR), which is a fungal epidemic disease that affects coffee trees and causes massive defoliation. As an example, this disease has been affecting coffee trees in Colombia (the third largest producer of coffee worldwide) since the 1980s, leading to devastating losses between 70% and 80% of the harvest. Failure to detect pathogens at an early stage can result in infestations that cause massive destruction of plantations and significantly damage the commercial value of the products. The most common way to detect this disease is by walking through the crop and performing a human visual inspection. As a result of this problem, different research studies have proven that technological methods can help to identify these pathogens. Our contribution is an experiment that includes a CLR development stage diagnostic model in the <i>Coffea arabica</i>, Caturra variety, scale crop through the technological integration of remote sensing (through drone capable multispectral cameras), wireless sensor networks (multisensor approach), and Deep Learning (DL) techniques. Our diagnostic model achieved an <i>F</i><sub>1</sub>-score of 0.775. The analysis of the results revealed a <i>p</i>-value of 0.231, which indicated that the difference between the disease diagnosis made employing a visual inspection and through the proposed technological integration was not statistically significant. The above shows that both methods were significantly similar to diagnose the disease.
topic coffee leaf rust
machine learning
deep learning
remote sensing
fourth industrial revolution
agriculture 4.0
url https://www.mdpi.com/2076-3417/10/2/697
work_keys_str_mv AT davidvelasquez amethodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT alejandrosanchez amethodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT sebastiansarmiento amethodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT mauriciotoro amethodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT mikelmaiza amethodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT basiliosierra amethodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT davidvelasquez methodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT alejandrosanchez methodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT sebastiansarmiento methodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT mauriciotoro methodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT mikelmaiza methodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
AT basiliosierra methodfordetectingcoffeeleafrustthroughwirelesssensornetworksremotesensinganddeeplearningcasestudyofthecaturravarietyincolombia
_version_ 1725034950951960576