Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
Abstract Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipod...
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doaj-80424d88767b43a7b7fcfd59b5622c612021-05-23T11:31:49ZengNature Publishing GroupScientific Reports2045-23222021-05-0111111310.1038/s41598-021-90162-1Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)Hoi-Sen Yong0Sze-Looi Song1Kah-Ooi Chua2I. Wayan Suana3Praphathip Eamsobhana4Ji Tan5Phaik-Eem Lim6Kok-Gan Chan7Institute of Biological Sciences, Faculty of Science, University of MalayaInstitute for Advanced Studies, University of MalayaInstitute of Biological Sciences, Faculty of Science, University of MalayaFaculty of Science and Mathematics, Mataram UniversityDepartment of Parasitology, Faculty of Medicine Siriraj Hospital, Mahidol UniversityDepartment of Agricultural and Food Science, Universiti Tunku Abdul RahmanInstitute of Ocean and Earth Sciences, University of MalayaInstitute of Biological Sciences, Faculty of Science, University of MalayaAbstract Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and T. vitiana (previously N. vitiana) to determine their features and phylogenetic relationship. Most of the tRNAs have aberrant clover-leaf secondary structure. Based on 13 protein-coding genes (PCGs) and 15 mitochondrial genes (13 PCGs and two rRNA genes), Nephila and Trichonephila form a clade distinctly separated from the other araneid subfamilies/genera. T. antipodiana forms a lineage with T. vitiana in the subclade containing also T. clavata, while N. pilipes forms a sister clade to Trichonephila. The taxon vitiana is therefore a member of the genus Trichonephila and not Nephila as currently recognized. Studies on the mitogenomes of other Nephila and Trichonephila species and related taxa are needed to provide a potentially more robust phylogeny and systematics.https://doi.org/10.1038/s41598-021-90162-1 |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
Hoi-Sen Yong Sze-Looi Song Kah-Ooi Chua I. Wayan Suana Praphathip Eamsobhana Ji Tan Phaik-Eem Lim Kok-Gan Chan |
spellingShingle |
Hoi-Sen Yong Sze-Looi Song Kah-Ooi Chua I. Wayan Suana Praphathip Eamsobhana Ji Tan Phaik-Eem Lim Kok-Gan Chan Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea) Scientific Reports |
author_facet |
Hoi-Sen Yong Sze-Looi Song Kah-Ooi Chua I. Wayan Suana Praphathip Eamsobhana Ji Tan Phaik-Eem Lim Kok-Gan Chan |
author_sort |
Hoi-Sen Yong |
title |
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea) |
title_short |
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea) |
title_full |
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea) |
title_fullStr |
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea) |
title_full_unstemmed |
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea) |
title_sort |
complete mitochondrial genomes and phylogenetic relationships of the genera nephila and trichonephila (araneae, araneoidea) |
publisher |
Nature Publishing Group |
series |
Scientific Reports |
issn |
2045-2322 |
publishDate |
2021-05-01 |
description |
Abstract Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and T. vitiana (previously N. vitiana) to determine their features and phylogenetic relationship. Most of the tRNAs have aberrant clover-leaf secondary structure. Based on 13 protein-coding genes (PCGs) and 15 mitochondrial genes (13 PCGs and two rRNA genes), Nephila and Trichonephila form a clade distinctly separated from the other araneid subfamilies/genera. T. antipodiana forms a lineage with T. vitiana in the subclade containing also T. clavata, while N. pilipes forms a sister clade to Trichonephila. The taxon vitiana is therefore a member of the genus Trichonephila and not Nephila as currently recognized. Studies on the mitogenomes of other Nephila and Trichonephila species and related taxa are needed to provide a potentially more robust phylogeny and systematics. |
url |
https://doi.org/10.1038/s41598-021-90162-1 |
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