Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)

Abstract Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipod...

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Main Authors: Hoi-Sen Yong, Sze-Looi Song, Kah-Ooi Chua, I. Wayan Suana, Praphathip Eamsobhana, Ji Tan, Phaik-Eem Lim, Kok-Gan Chan
Format: Article
Language:English
Published: Nature Publishing Group 2021-05-01
Series:Scientific Reports
Online Access:https://doi.org/10.1038/s41598-021-90162-1
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spelling doaj-80424d88767b43a7b7fcfd59b5622c612021-05-23T11:31:49ZengNature Publishing GroupScientific Reports2045-23222021-05-0111111310.1038/s41598-021-90162-1Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)Hoi-Sen Yong0Sze-Looi Song1Kah-Ooi Chua2I. Wayan Suana3Praphathip Eamsobhana4Ji Tan5Phaik-Eem Lim6Kok-Gan Chan7Institute of Biological Sciences, Faculty of Science, University of MalayaInstitute for Advanced Studies, University of MalayaInstitute of Biological Sciences, Faculty of Science, University of MalayaFaculty of Science and Mathematics, Mataram UniversityDepartment of Parasitology, Faculty of Medicine Siriraj Hospital, Mahidol UniversityDepartment of Agricultural and Food Science, Universiti Tunku Abdul RahmanInstitute of Ocean and Earth Sciences, University of MalayaInstitute of Biological Sciences, Faculty of Science, University of MalayaAbstract Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and T. vitiana (previously N. vitiana) to determine their features and phylogenetic relationship. Most of the tRNAs have aberrant clover-leaf secondary structure. Based on 13 protein-coding genes (PCGs) and 15 mitochondrial genes (13 PCGs and two rRNA genes), Nephila and Trichonephila form a clade distinctly separated from the other araneid subfamilies/genera. T. antipodiana forms a lineage with T. vitiana in the subclade containing also T. clavata, while N. pilipes forms a sister clade to Trichonephila. The taxon vitiana is therefore a member of the genus Trichonephila and not Nephila as currently recognized. Studies on the mitogenomes of other Nephila and Trichonephila species and related taxa are needed to provide a potentially more robust phylogeny and systematics.https://doi.org/10.1038/s41598-021-90162-1
collection DOAJ
language English
format Article
sources DOAJ
author Hoi-Sen Yong
Sze-Looi Song
Kah-Ooi Chua
I. Wayan Suana
Praphathip Eamsobhana
Ji Tan
Phaik-Eem Lim
Kok-Gan Chan
spellingShingle Hoi-Sen Yong
Sze-Looi Song
Kah-Ooi Chua
I. Wayan Suana
Praphathip Eamsobhana
Ji Tan
Phaik-Eem Lim
Kok-Gan Chan
Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
Scientific Reports
author_facet Hoi-Sen Yong
Sze-Looi Song
Kah-Ooi Chua
I. Wayan Suana
Praphathip Eamsobhana
Ji Tan
Phaik-Eem Lim
Kok-Gan Chan
author_sort Hoi-Sen Yong
title Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_short Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_full Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_fullStr Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_full_unstemmed Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea)
title_sort complete mitochondrial genomes and phylogenetic relationships of the genera nephila and trichonephila (araneae, araneoidea)
publisher Nature Publishing Group
series Scientific Reports
issn 2045-2322
publishDate 2021-05-01
description Abstract Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and T. vitiana (previously N. vitiana) to determine their features and phylogenetic relationship. Most of the tRNAs have aberrant clover-leaf secondary structure. Based on 13 protein-coding genes (PCGs) and 15 mitochondrial genes (13 PCGs and two rRNA genes), Nephila and Trichonephila form a clade distinctly separated from the other araneid subfamilies/genera. T. antipodiana forms a lineage with T. vitiana in the subclade containing also T. clavata, while N. pilipes forms a sister clade to Trichonephila. The taxon vitiana is therefore a member of the genus Trichonephila and not Nephila as currently recognized. Studies on the mitogenomes of other Nephila and Trichonephila species and related taxa are needed to provide a potentially more robust phylogeny and systematics.
url https://doi.org/10.1038/s41598-021-90162-1
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