Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, India
This is a pioneering report on the metagenomic exploration of the bacterial diversity from a busy sea port in Paradip, Odisha, India. In our study, high-throughput sequencing of community 16S rRNA gene amplicon was performed using 454 GS Junior platform. Metagenome contain 34,121 sequences with 16,6...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2016-03-01
|
| Series: | Genomics Data |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2213596015301057 |
| id |
doaj-7ce9b5c817ff4436b64ec19ffa33db00 |
|---|---|
| record_format |
Article |
| spelling |
doaj-7ce9b5c817ff4436b64ec19ffa33db002020-11-25T03:24:15ZengElsevierGenomics Data2213-59602016-03-0179496Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, IndiaArnab Pramanik0Pijush Basak1Satabdi Banerjee2Sanghamitra Sengupta3Dhrubajyoti Chattopadhyay4Maitree Bhattacharyya5Department of Biochemistry, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700 019, West Bengal, IndiaDepartment of Biochemistry, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700 019, West Bengal, IndiaDepartment of Biochemistry, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700 019, West Bengal, IndiaDepartment of Biochemistry, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700 019, West Bengal, India; Corresponding authors.Amity University, Major Arterial Road, Action Area II, Kadampukur Village, Rajarhat, Newtown, Kolkata, West Bengal 700156, India; Corresponding authors.Department of Biochemistry, University of Calcutta, 35, Ballygunge Circular Road, Kolkata 700 019, West Bengal, India; Corresponding authors.This is a pioneering report on the metagenomic exploration of the bacterial diversity from a busy sea port in Paradip, Odisha, India. In our study, high-throughput sequencing of community 16S rRNA gene amplicon was performed using 454 GS Junior platform. Metagenome contain 34,121 sequences with 16,677,333 bp and 56.3% G + C content. Metagenome sequences data are now available at NCBI under the Sequence Read Archive (SRA) database with accession no. SRX897055. Community metagenome sequence revealed the presence of 11,705 species belonging to 40 different phyla. Bacteroidetes (23%), Firmicutes (19%), Proteobacteria (17%), Spirochaetes (10%), Nitrospirae (8%), Actinobacteria (7%) and Acidobacteria (3%) are the predominant bacterial phyla in this port soil. Analysis of metagenomic sequences unfolded the interesting distribution of several phyla which pointed to the significant anthropogenic intervention influencing the bacterial community character of this port. Keywords: Pyrosequencing, Bacteria, Diversity, Paradip Port, Metagenomicshttp://www.sciencedirect.com/science/article/pii/S2213596015301057 |
| collection |
DOAJ |
| language |
English |
| format |
Article |
| sources |
DOAJ |
| author |
Arnab Pramanik Pijush Basak Satabdi Banerjee Sanghamitra Sengupta Dhrubajyoti Chattopadhyay Maitree Bhattacharyya |
| spellingShingle |
Arnab Pramanik Pijush Basak Satabdi Banerjee Sanghamitra Sengupta Dhrubajyoti Chattopadhyay Maitree Bhattacharyya Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, India Genomics Data |
| author_facet |
Arnab Pramanik Pijush Basak Satabdi Banerjee Sanghamitra Sengupta Dhrubajyoti Chattopadhyay Maitree Bhattacharyya |
| author_sort |
Arnab Pramanik |
| title |
Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, India |
| title_short |
Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, India |
| title_full |
Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, India |
| title_fullStr |
Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, India |
| title_full_unstemmed |
Metagenomic exploration of the bacterial community structure at Paradip Port, Odisha, India |
| title_sort |
metagenomic exploration of the bacterial community structure at paradip port, odisha, india |
| publisher |
Elsevier |
| series |
Genomics Data |
| issn |
2213-5960 |
| publishDate |
2016-03-01 |
| description |
This is a pioneering report on the metagenomic exploration of the bacterial diversity from a busy sea port in Paradip, Odisha, India. In our study, high-throughput sequencing of community 16S rRNA gene amplicon was performed using 454 GS Junior platform. Metagenome contain 34,121 sequences with 16,677,333 bp and 56.3% G + C content. Metagenome sequences data are now available at NCBI under the Sequence Read Archive (SRA) database with accession no. SRX897055. Community metagenome sequence revealed the presence of 11,705 species belonging to 40 different phyla. Bacteroidetes (23%), Firmicutes (19%), Proteobacteria (17%), Spirochaetes (10%), Nitrospirae (8%), Actinobacteria (7%) and Acidobacteria (3%) are the predominant bacterial phyla in this port soil. Analysis of metagenomic sequences unfolded the interesting distribution of several phyla which pointed to the significant anthropogenic intervention influencing the bacterial community character of this port. Keywords: Pyrosequencing, Bacteria, Diversity, Paradip Port, Metagenomics |
| url |
http://www.sciencedirect.com/science/article/pii/S2213596015301057 |
| work_keys_str_mv |
AT arnabpramanik metagenomicexplorationofthebacterialcommunitystructureatparadipportodishaindia AT pijushbasak metagenomicexplorationofthebacterialcommunitystructureatparadipportodishaindia AT satabdibanerjee metagenomicexplorationofthebacterialcommunitystructureatparadipportodishaindia AT sanghamitrasengupta metagenomicexplorationofthebacterialcommunitystructureatparadipportodishaindia AT dhrubajyotichattopadhyay metagenomicexplorationofthebacterialcommunitystructureatparadipportodishaindia AT maitreebhattacharyya metagenomicexplorationofthebacterialcommunitystructureatparadipportodishaindia |
| _version_ |
1724602587357904896 |