Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins

FTIR and Raman spectroscopy are often used to investigate the secondary structure of proteins. Focus is then often laid on the different features that can be distinguished in the Amide I band (1600–1700 cm<sup>−1</sup>) and, to a lesser extent, the Amide II band (1510–1580 cm<sup>−...

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Main Authors: Azin Sadat, Iris J. Joye
Format: Article
Language:English
Published: MDPI AG 2020-08-01
Series:Applied Sciences
Subjects:
Online Access:https://www.mdpi.com/2076-3417/10/17/5918
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spelling doaj-7c778abac1234fb0b4ebd1e6e0abffe62020-11-25T03:48:02ZengMDPI AGApplied Sciences2076-34172020-08-01105918591810.3390/app10175918Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of ProteinsAzin Sadat0Iris J. Joye1Department of Food Science, University of Guelph, Guelph, ON N1G 2W1, CanadaDepartment of Food Science, University of Guelph, Guelph, ON N1G 2W1, CanadaFTIR and Raman spectroscopy are often used to investigate the secondary structure of proteins. Focus is then often laid on the different features that can be distinguished in the Amide I band (1600–1700 cm<sup>−1</sup>) and, to a lesser extent, the Amide II band (1510–1580 cm<sup>−1</sup>), signature regions for C=O stretching/N-H bending, and N-H bending/C-N stretching vibrations, respectively. Proper investigation of all hidden and overlapping features/peaks is a necessary step to achieve reliable analysis of FTIR and FT-Raman spectra of proteins. This paper discusses a method to identify, separate, and quantify the hidden peaks in the amide I band region of infrared and Raman spectra of four globular proteins in aqueous solution as well as hydrated zein and gluten proteins. The globular proteins studied, which differ widely in terms of their secondary structures, include immunoglobulin G, concanavalin A, lysozyme, and trypsin. Peak finding was done by analysis of the second derivative of the original spectra. Peak separation and quantification was achieved by curve fitting using the Voigt function. Structural data derived from the FT-Raman and FTIR analyses were compared to literature reports on protein structure. This manuscript proposes an accurate method to analyze protein secondary structure based on the amide I band in vibrational spectra.https://www.mdpi.com/2076-3417/10/17/5918infrared (IR) spectroscopyRaman spectroscopypeak fittingglutenzein
collection DOAJ
language English
format Article
sources DOAJ
author Azin Sadat
Iris J. Joye
spellingShingle Azin Sadat
Iris J. Joye
Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins
Applied Sciences
infrared (IR) spectroscopy
Raman spectroscopy
peak fitting
gluten
zein
author_facet Azin Sadat
Iris J. Joye
author_sort Azin Sadat
title Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins
title_short Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins
title_full Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins
title_fullStr Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins
title_full_unstemmed Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins
title_sort peak fitting applied to fourier transform infrared and raman spectroscopic analysis of proteins
publisher MDPI AG
series Applied Sciences
issn 2076-3417
publishDate 2020-08-01
description FTIR and Raman spectroscopy are often used to investigate the secondary structure of proteins. Focus is then often laid on the different features that can be distinguished in the Amide I band (1600–1700 cm<sup>−1</sup>) and, to a lesser extent, the Amide II band (1510–1580 cm<sup>−1</sup>), signature regions for C=O stretching/N-H bending, and N-H bending/C-N stretching vibrations, respectively. Proper investigation of all hidden and overlapping features/peaks is a necessary step to achieve reliable analysis of FTIR and FT-Raman spectra of proteins. This paper discusses a method to identify, separate, and quantify the hidden peaks in the amide I band region of infrared and Raman spectra of four globular proteins in aqueous solution as well as hydrated zein and gluten proteins. The globular proteins studied, which differ widely in terms of their secondary structures, include immunoglobulin G, concanavalin A, lysozyme, and trypsin. Peak finding was done by analysis of the second derivative of the original spectra. Peak separation and quantification was achieved by curve fitting using the Voigt function. Structural data derived from the FT-Raman and FTIR analyses were compared to literature reports on protein structure. This manuscript proposes an accurate method to analyze protein secondary structure based on the amide I band in vibrational spectra.
topic infrared (IR) spectroscopy
Raman spectroscopy
peak fitting
gluten
zein
url https://www.mdpi.com/2076-3417/10/17/5918
work_keys_str_mv AT azinsadat peakfittingappliedtofouriertransforminfraredandramanspectroscopicanalysisofproteins
AT irisjjoye peakfittingappliedtofouriertransforminfraredandramanspectroscopicanalysisofproteins
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