Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic Anthropology

Age-at-death estimation constitutes one of the key parameters for identification of human remains in forensic investigations. However, for applications in forensic anthropology, many current methods are not sufficiently accurate for adult individuals, leading to chronological age estimates erring by...

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Main Authors: Sara C. Zapico, Quentin Gauthier, Aleksandra Antevska, Bruce R. McCord
Format: Article
Language:English
Published: MDPI AG 2021-04-01
Series:International Journal of Molecular Sciences
Subjects:
Online Access:https://www.mdpi.com/1422-0067/22/7/3717
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spelling doaj-7a95fabe0fd647a7bcee26baf7933f962021-04-02T23:03:33ZengMDPI AGInternational Journal of Molecular Sciences1661-65961422-00672021-04-01223717371710.3390/ijms22073717Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic AnthropologySara C. Zapico0Quentin Gauthier1Aleksandra Antevska2Bruce R. McCord3Department of Chemistry and Biochemistry and International Forensic Research Institute, Florida International University, Miami, FL 33199, USADepartment of Chemistry and Biochemistry and International Forensic Research Institute, Florida International University, Miami, FL 33199, USADepartment of Chemistry, The University of Tennessee, Knoxville, Knoxville, TN 37996, USADepartment of Chemistry and Biochemistry and International Forensic Research Institute, Florida International University, Miami, FL 33199, USAAge-at-death estimation constitutes one of the key parameters for identification of human remains in forensic investigations. However, for applications in forensic anthropology, many current methods are not sufficiently accurate for adult individuals, leading to chronological age estimates erring by ±10 years. Based on recent trends in aging studies, DNA methylation has great potential as a solution to this problem. However, there are only a few studies that have been published utilizing DNA methylation to determine age from human remains. The aim of the present study was to expand the range of this work by analyzing DNA methylation in dental pulp from adult individuals. Healthy erupted third molars were extracted from individuals aged 22–70. DNA from pulp was isolated and bisulfite converted. Pyrosequencing was the chosen technique to assess DNA methylation. As noted in previous studies, we found that ELOVL2 and FHL2 CpGs played a role in age estimation. In addition, three new markers were evaluated—NPTX2, KLF14, and SCGN. A set of CpGs from these five loci was used in four different multivariate regression models, providing a Mean Absolute Error (MAE) between predicted and chronological age of 1.5–2.13 years. The findings from this research can improve age estimation, increasing the accuracy of identification in forensic anthropology.https://www.mdpi.com/1422-0067/22/7/3717age-at-death estimationadultsteethpulpDNA methylationELOVL2
collection DOAJ
language English
format Article
sources DOAJ
author Sara C. Zapico
Quentin Gauthier
Aleksandra Antevska
Bruce R. McCord
spellingShingle Sara C. Zapico
Quentin Gauthier
Aleksandra Antevska
Bruce R. McCord
Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic Anthropology
International Journal of Molecular Sciences
age-at-death estimation
adults
teeth
pulp
DNA methylation
ELOVL2
author_facet Sara C. Zapico
Quentin Gauthier
Aleksandra Antevska
Bruce R. McCord
author_sort Sara C. Zapico
title Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic Anthropology
title_short Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic Anthropology
title_full Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic Anthropology
title_fullStr Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic Anthropology
title_full_unstemmed Identifying Methylation Patterns in Dental Pulp Aging: Application to Age-at-Death Estimation in Forensic Anthropology
title_sort identifying methylation patterns in dental pulp aging: application to age-at-death estimation in forensic anthropology
publisher MDPI AG
series International Journal of Molecular Sciences
issn 1661-6596
1422-0067
publishDate 2021-04-01
description Age-at-death estimation constitutes one of the key parameters for identification of human remains in forensic investigations. However, for applications in forensic anthropology, many current methods are not sufficiently accurate for adult individuals, leading to chronological age estimates erring by ±10 years. Based on recent trends in aging studies, DNA methylation has great potential as a solution to this problem. However, there are only a few studies that have been published utilizing DNA methylation to determine age from human remains. The aim of the present study was to expand the range of this work by analyzing DNA methylation in dental pulp from adult individuals. Healthy erupted third molars were extracted from individuals aged 22–70. DNA from pulp was isolated and bisulfite converted. Pyrosequencing was the chosen technique to assess DNA methylation. As noted in previous studies, we found that ELOVL2 and FHL2 CpGs played a role in age estimation. In addition, three new markers were evaluated—NPTX2, KLF14, and SCGN. A set of CpGs from these five loci was used in four different multivariate regression models, providing a Mean Absolute Error (MAE) between predicted and chronological age of 1.5–2.13 years. The findings from this research can improve age estimation, increasing the accuracy of identification in forensic anthropology.
topic age-at-death estimation
adults
teeth
pulp
DNA methylation
ELOVL2
url https://www.mdpi.com/1422-0067/22/7/3717
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