Fast analysis of scATAC-seq data using a predefined set of genomic regions [version 2; peer review: 2 approved]

Background: Analysis of scATAC-seq data has been recently scaled to thousands of cells. While processing of other types of single cell data was boosted by the implementation of alignment-free techniques, pipelines available to process scATAC-seq data still require large computational resources. We p...

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Bibliographic Details
Main Authors: Valentina Giansanti, Ming Tang, Davide Cittaro
Format: Article
Language:English
Published: F1000 Research Ltd 2020-05-01
Series:F1000Research
Online Access:https://f1000research.com/articles/9-199/v2