Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data
Computational single-cell RNA-seq analyses often face challenges in scalability, model interpretability, and confounders. Here, we show a new model to address these challenges by learning meaningful embeddings from the data that simultaneously refine gene signatures and cell functions in diverse con...
Main Authors: | Yifan Zhao, Huiyu Cai, Zuobai Zhang, Jian Tang, Yue Li |
---|---|
Format: | Article |
Language: | English |
Published: |
Nature Publishing Group
2021-09-01
|
Series: | Nature Communications |
Online Access: | https://doi.org/10.1038/s41467-021-25534-2 |
Similar Items
-
Publisher Correction: Learning interpretable cellular and gene signature embeddings from single-cell transcriptomic data
by: Yifan Zhao, et al.
Published: (2021-10-01) -
Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature
by: Chao Yang, et al.
Published: (2020-05-01) -
Interpretable dimensionality reduction of single cell transcriptome data with deep generative models
by: Jiarui Ding, et al.
Published: (2018-05-01) -
Dependence of Impedance of Embedded Single Cells on Cellular Behaviour
by: Hagen Thielecke, et al.
Published: (2008-02-01) -
Single-Cell Transcriptome Analysis in Melanoma Using Network Embedding
by: Liming Wang, et al.
Published: (2021-07-01)