Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture Modeling

This study addresses the problem of age determination of the southern king crab (<i>Lithodes santolla</i>). Given that recapture is difficult for this species and, thus, age cannot be directly determined with the help of the annual marks on the shell, the von Bertalanffy growth function...

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Main Authors: Javier E. Contreras-Reyes, Freddy O. López Quintero, Alejandro A. Yáñez
Format: Article
Language:English
Published: MDPI AG 2018-12-01
Series:Journal of Marine Science and Engineering
Subjects:
Online Access:https://www.mdpi.com/2077-1312/6/4/157
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record_format Article
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language English
format Article
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author Javier E. Contreras-Reyes
Freddy O. López Quintero
Alejandro A. Yáñez
spellingShingle Javier E. Contreras-Reyes
Freddy O. López Quintero
Alejandro A. Yáñez
Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture Modeling
Journal of Marine Science and Engineering
finite mixture
skew-<i>t</i> distribution
southern king crab
length-frequency data
von Bertalanffy
author_facet Javier E. Contreras-Reyes
Freddy O. López Quintero
Alejandro A. Yáñez
author_sort Javier E. Contreras-Reyes
title Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture Modeling
title_short Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture Modeling
title_full Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture Modeling
title_fullStr Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture Modeling
title_full_unstemmed Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture Modeling
title_sort towards age determination of southern king crab (<i>lithodes santolla</i>) off southern chile using flexible mixture modeling
publisher MDPI AG
series Journal of Marine Science and Engineering
issn 2077-1312
publishDate 2018-12-01
description This study addresses the problem of age determination of the southern king crab (<i>Lithodes santolla</i>). Given that recapture is difficult for this species and, thus, age cannot be directly determined with the help of the annual marks on the shell, the von Bertalanffy growth function (vBGF) cannot be used to directly model length-frequency data (LFD). To determine age classes, some researchers have proposed using the MIX algorithm that consists of sampling realization of a finite mixture of normal (FMN) distributions for each LFD. However, normality assumption in age-length data has been questioned in several works related to fish growth analysis. For this study, we considered the biological information of the southern king crab for the period 2007&#8315;2015 and localization between <inline-formula> <math display="inline"> <semantics> <msup> <mn>50</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>06<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula>&#8315;<inline-formula> <math display="inline"> <semantics> <msup> <mn>53</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>15<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula> S and <inline-formula> <math display="inline"> <semantics> <msup> <mn>76</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>36<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula>&#8315;<inline-formula> <math display="inline"> <semantics> <msup> <mn>72</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>18<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula> W. We assumed that LFD could be modelled by the novel class of finite mixture of skew-<i>t</i> (FMST). Assigned age classes were used to estimate the vBGF parameters. The estimated vBGF parameters were <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>L</mi> <mo>&#8734;</mo> </msub> <mo>=</mo> <mn>176.756</mn> </mrow> </semantics> </math> </inline-formula> cm, <inline-formula> <math display="inline"> <semantics> <mrow> <mi>K</mi> <mo>=</mo> <mn>0.151</mn> </mrow> </semantics> </math> </inline-formula> <inline-formula> <math display="inline"> <semantics> <msup> <mrow> <mi>year</mi> </mrow> <mrow> <mo>&#8722;</mo> <mn>1</mn> </mrow> </msup> </semantics> </math> </inline-formula>, <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>t</mi> <mn>0</mn> </msub> <mo>=</mo> <mo>&#8722;</mo> <mn>1.678</mn> </mrow> </semantics> </math> </inline-formula> year for males, and <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>L</mi> <mo>&#8734;</mo> </msub> <mo>=</mo> <mn>134.799</mn> </mrow> </semantics> </math> </inline-formula> cm, <inline-formula> <math display="inline"> <semantics> <mrow> <mi>K</mi> <mo>=</mo> <mn>0.220</mn> </mrow> </semantics> </math> </inline-formula> <inline-formula> <math display="inline"> <semantics> <msup> <mrow> <mi>year</mi> </mrow> <mrow> <mo>&#8722;</mo> <mn>1</mn> </mrow> </msup> </semantics> </math> </inline-formula>, <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>t</mi> <mn>0</mn> </msub> <mo>=</mo> <mo>&#8722;</mo> <mn>1.302</mn> </mrow> </semantics> </math> </inline-formula> year for females. This study concludes that (a) FMST modal decomposition can detect a group of younger individuals at age 2, given that those individuals have LFD with a left heavy-tail and asymmetry; (b) FMST produces a better representation of LFD than the FMN model; (c) males have bigger <inline-formula> <math display="inline"> <semantics> <msub> <mi>L</mi> <mo>&#8734;</mo> </msub> </semantics> </math> </inline-formula> but grow slower than females; and (d) as expected, a high correlation exists among the vBGF estimates.
topic finite mixture
skew-<i>t</i> distribution
southern king crab
length-frequency data
von Bertalanffy
url https://www.mdpi.com/2077-1312/6/4/157
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AT alejandroayanez towardsagedeterminationofsouthernkingcrabilithodessantollaioffsouthernchileusingflexiblemixturemodeling
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spelling doaj-75ec350634294f2296da1cc7229cf2ff2021-04-02T09:21:46ZengMDPI AGJournal of Marine Science and Engineering2077-13122018-12-016415710.3390/jmse6040157jmse6040157Towards Age Determination of Southern King Crab (<i>Lithodes santolla</i>) Off Southern Chile Using Flexible Mixture ModelingJavier E. Contreras-Reyes0Freddy O. López Quintero1Alejandro A. Yáñez2Instituto de Estadística, Universidad de Valparaíso, Valparaíso 2360102, ChileTelefónica I+D, Compañía de Telecomunicaciones de Chile S.A., Santiago 7501105, ChileDepartamento de Evaluación de Recursos, Instituto de Fomento Pesquero, Valparaíso 2361827, ChileThis study addresses the problem of age determination of the southern king crab (<i>Lithodes santolla</i>). Given that recapture is difficult for this species and, thus, age cannot be directly determined with the help of the annual marks on the shell, the von Bertalanffy growth function (vBGF) cannot be used to directly model length-frequency data (LFD). To determine age classes, some researchers have proposed using the MIX algorithm that consists of sampling realization of a finite mixture of normal (FMN) distributions for each LFD. However, normality assumption in age-length data has been questioned in several works related to fish growth analysis. For this study, we considered the biological information of the southern king crab for the period 2007&#8315;2015 and localization between <inline-formula> <math display="inline"> <semantics> <msup> <mn>50</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>06<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula>&#8315;<inline-formula> <math display="inline"> <semantics> <msup> <mn>53</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>15<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula> S and <inline-formula> <math display="inline"> <semantics> <msup> <mn>76</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>36<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula>&#8315;<inline-formula> <math display="inline"> <semantics> <msup> <mn>72</mn> <mo>∘</mo> </msup> </semantics> </math> </inline-formula>18<inline-formula> <math display="inline"> <semantics> <msup> <mrow></mrow> <mo>&#8242;</mo> </msup> </semantics> </math> </inline-formula> W. We assumed that LFD could be modelled by the novel class of finite mixture of skew-<i>t</i> (FMST). Assigned age classes were used to estimate the vBGF parameters. The estimated vBGF parameters were <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>L</mi> <mo>&#8734;</mo> </msub> <mo>=</mo> <mn>176.756</mn> </mrow> </semantics> </math> </inline-formula> cm, <inline-formula> <math display="inline"> <semantics> <mrow> <mi>K</mi> <mo>=</mo> <mn>0.151</mn> </mrow> </semantics> </math> </inline-formula> <inline-formula> <math display="inline"> <semantics> <msup> <mrow> <mi>year</mi> </mrow> <mrow> <mo>&#8722;</mo> <mn>1</mn> </mrow> </msup> </semantics> </math> </inline-formula>, <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>t</mi> <mn>0</mn> </msub> <mo>=</mo> <mo>&#8722;</mo> <mn>1.678</mn> </mrow> </semantics> </math> </inline-formula> year for males, and <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>L</mi> <mo>&#8734;</mo> </msub> <mo>=</mo> <mn>134.799</mn> </mrow> </semantics> </math> </inline-formula> cm, <inline-formula> <math display="inline"> <semantics> <mrow> <mi>K</mi> <mo>=</mo> <mn>0.220</mn> </mrow> </semantics> </math> </inline-formula> <inline-formula> <math display="inline"> <semantics> <msup> <mrow> <mi>year</mi> </mrow> <mrow> <mo>&#8722;</mo> <mn>1</mn> </mrow> </msup> </semantics> </math> </inline-formula>, <inline-formula> <math display="inline"> <semantics> <mrow> <msub> <mi>t</mi> <mn>0</mn> </msub> <mo>=</mo> <mo>&#8722;</mo> <mn>1.302</mn> </mrow> </semantics> </math> </inline-formula> year for females. This study concludes that (a) FMST modal decomposition can detect a group of younger individuals at age 2, given that those individuals have LFD with a left heavy-tail and asymmetry; (b) FMST produces a better representation of LFD than the FMN model; (c) males have bigger <inline-formula> <math display="inline"> <semantics> <msub> <mi>L</mi> <mo>&#8734;</mo> </msub> </semantics> </math> </inline-formula> but grow slower than females; and (d) as expected, a high correlation exists among the vBGF estimates.https://www.mdpi.com/2077-1312/6/4/157finite mixtureskew-<i>t</i> distributionsouthern king crablength-frequency datavon Bertalanffy