On the analysis of the Illumina 450K array data: probes ambiguously mapped to the human genome

On the analysis of the Illumina 450K array data: probes ambiguously mapped to the human genome

Bibliographic Details
Main Authors:	Xu eZhang, Wenbo eMu, Wei eZhang
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2012-05-01
Series:	Frontiers in Genetics
Subjects:	DNA Methylation 450K array
Online Access:	http://journal.frontiersin.org/Journal/10.3389/fgene.2012.00073/full

Similar Items

Between-array normalization for 450K data
by: Jonathan Alexander Heiss, et al.
Published: (2015-03-01)

An effective processing pipeline for harmonizing DNA methylation data from Illumina’s 450K and EPIC platforms for epidemiological studies
by: Lauren A. Vanderlinden, et al.
Published: (2021-09-01)

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
by: Zhenxing Wang, et al.
Published: (2018-04-01)

MGMIN: A Normalization Method for Correcting Probe Design Bias in Illumina Infinium HumanMethylation450 BeadChips
by: Zhenxing Wang, et al.
Published: (2020-10-01)

Identification of DNA methylation biomarkers from Infinium arrays
by: Richard D Emes, et al.
Published: (2012-08-01)

Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs
by: Jenny van Dongen, et al.
Published: (2018-09-01)

Identification of methylation states of DNA regions for Illumina methylation BeadChip
by: Ximei Luo, et al.
Published: (2020-03-01)

DaVIE: Database for the Visualization and Integration of Epigenetic data.
by: Anthony Peter Fejes, et al.
Published: (2014-09-01)

Simulating ComBat: how batch correction can lead to the systematic introduction of false positive results in DNA methylation microarray studies
by: Tristan Zindler, et al.
Published: (2020-06-01)

Adjusting for Batch Effects in DNA Methylation Microarray Data, a Lesson Learned
by: E. M. Price, et al.
Published: (2018-03-01)

MethylToSNP: identifying SNPs in Illumina DNA methylation array data
by: Brenna A. LaBarre, et al.
Published: (2019-12-01)

DNA Methylation Alterations in Blood Cells of Toddlers with Down Syndrome
by: Oxana Yu. Naumova, et al.
Published: (2021-07-01)

A validation of Illumina EPIC array system with bisulfite-based amplicon sequencing
by: Alexandra J. Noble, et al.
Published: (2021-02-01)

No evidence for association of MTHFR 677C>T and 1298A>C variants with placental DNA methylation
by: Giulia F. Del Gobbo, et al.
Published: (2018-03-01)

Epigenome-wide data collection in a case of gliofibroma
by: Felix Behling, et al.
Published: (2021-06-01)

DNA Methylation Signatures Predict Cytogenetic Subtype and Outcome in Pediatric Acute Myeloid Leukemia (AML)
by: Olga Krali, et al.
Published: (2021-06-01)

Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array
by: Lisa M McEwen, et al.
Published: (2018-10-01)

Evaluation of commonly used analysis strategies for epigenome- and transcriptome-wide association studies through replication of large-scale population studies
by: Jeroen van Rooij, et al.
Published: (2019-11-01)

Guidance for DNA methylation studies: statistical insights from the Illumina EPIC array
by: Georgina Mansell, et al.
Published: (2019-05-01)

A cross-cohort analysis of autosomal DNA methylation sex differences in the term placenta
by: Amy M. Inkster, et al.
Published: (2021-05-01)

Age-related DNA methylation changes are tissue-specific with ELOVL2 promoter methylation as exception
by: Roderick C. Slieker, et al.
Published: (2018-05-01)

Cord blood hematopoietic cells from preterm infants display altered DNA methylation patterns
by: Olivia M. de Goede, et al.
Published: (2017-04-01)

Stratified randomization controls better for batch effects in 450K methylation analysis: A cautionary tale
by: Olive D. Buhule, et al.
Published: (2014-10-01)

Integration of DNA methylation patterns and genetic variation in human pediatric tissues help inform EWAS design and interpretation
by: Sumaiya A. Islam, et al.
Published: (2019-01-01)

Multi-platform genome-wide analysis of melanoma progression to brain metastasis
by: Diego M. Marzese, et al.
Published: (2014-12-01)

Identifying mislabeled and contaminated DNA methylation microarray data: an extended quality control toolset with examples from GEO
by: Jonathan A. Heiss, et al.
Published: (2018-06-01)

Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data
by: Molloy, P.L, et al.
Published: (2022)

Interaction between prenatal pesticide exposure and a common polymorphism in the PON1 gene on DNA methylation in genes associated with cardio-metabolic disease risk—an exploratory study
by: Ken Declerck, et al.
Published: (2017-04-01)

Bioinformatic resources of microRNA sequences, gene targets and genetic variation
by: Wenbo eMu, et al.
Published: (2012-03-01)

GLI2 promoter hypermethylation in saliva of children with a respiratory allergy
by: Sabine A. S. Langie, et al.
Published: (2018-04-01)

Maternal blood contamination of collected cord blood can be identified using DNA methylation at three CpGs
by: Alexander M. Morin, et al.
Published: (2017-07-01)

Epigenetic Variation in Monozygotic Twins: A Genome-Wide Analysis of DNA Methylation in Buccal Cells
by: Jenny van Dongen, et al.
Published: (2014-05-01)

Probing the Role of the Hinge Segment of Cytochrome P450 Oxidoreductase in the Interaction with Cytochrome P450
by: Diana Campelo, et al.
Published: (2018-12-01)

A study to investigate the mechanisms of danshen-drug interactions using cytochrome P450 probe substrates.
Published: (2007)

Probing cytochrome P450 (CYP) bioactivation with chloromethylindoline bioprecursors derived from the duocarmycin family of compounds
by: Ortuzar, N., et al.
Published: (2021)

Multiple Sources Localization With WSN, Eliminating the Direction-of-Arrival Ambiguity Symmetric With Respect to the Planar Array
by: Yue Ivan Wu
Published: (2018-01-01)

PHARMACOGENOMICS OF HUMAN P450 OXIDOREDUCTASE
by: Amit V Pandey, et al.
Published: (2014-05-01)

Evaluation of cytochrome P-450 concentration in Saccharomyces cerevisiae strains
by: Míriam Cristina Sakuragui Matuo, et al.
Published: (2010-09-01)

Gene polymorphism of cytochrome P450 significantly affects lung cancer susceptibility
by: Meng Li, et al.
Published: (2019-08-01)

The fluroxene mediated degradation of cytochromes P-450
by: Bradshaw, Jennifer Jean
Published: (2020)