Effects of translational and rotational degrees of freedom on the properties of model water
Molecular dynamics simulations with separate thermostats for rotational and translational motions were used to study the effects of these degrees of freedom on the structure of water at a fixed density. To describe water molecules, we used the SPC/E model. The results indicate that an increase of th...
Main Authors: | , , |
---|---|
Format: | Article |
Language: | English |
Published: |
Institute for Condensed Matter Physics
2015-03-01
|
Series: | Condensed Matter Physics |
Subjects: | |
Online Access: | http://dx.doi.org/10.5488/CMP.18.13004 |
id |
doaj-74b32935b6424ac99250ece49665217c |
---|---|
record_format |
Article |
spelling |
doaj-74b32935b6424ac99250ece49665217c2020-11-24T21:06:34ZengInstitute for Condensed Matter PhysicsCondensed Matter Physics1607-324X2015-03-011821300410.5488/CMP.18.13004Effects of translational and rotational degrees of freedom on the properties of model water T. Mohorič B. Hribar-LeeV. VlachyMolecular dynamics simulations with separate thermostats for rotational and translational motions were used to study the effects of these degrees of freedom on the structure of water at a fixed density. To describe water molecules, we used the SPC/E model. The results indicate that an increase of the rotational temperature, T<sub>R</sub>, causes a significant breaking of the hydrogen bonds. This is not the case, at least not to such an extent, when the translational temperature, T<sub>T</sub>, is raised. The probability of finding an empty spherical cavity (no water molecule present) of a given size, strongly decreases with an increase of T<sub>R</sub>, but this only marginally affects the free energy of the hydrophobe insertion. The excess internal energy increases proportionally with an increase of T<sub>R</sub>, while an increase of T<sub>T</sub> yields a much smaller effect at high temperatures. The diffusion coefficient of water exhibits a non-monotonous behaviour with an increase of the rotational temperature.http://dx.doi.org/10.5488/CMP.18.13004water structuredegrees of freedommolecular dynamics |
collection |
DOAJ |
language |
English |
format |
Article |
sources |
DOAJ |
author |
T. Mohorič B. Hribar-Lee V. Vlachy |
spellingShingle |
T. Mohorič B. Hribar-Lee V. Vlachy Effects of translational and rotational degrees of freedom on the properties of model water Condensed Matter Physics water structure degrees of freedom molecular dynamics |
author_facet |
T. Mohorič B. Hribar-Lee V. Vlachy |
author_sort |
T. Mohorič |
title |
Effects of translational and rotational degrees of freedom on the properties of model water |
title_short |
Effects of translational and rotational degrees of freedom on the properties of model water |
title_full |
Effects of translational and rotational degrees of freedom on the properties of model water |
title_fullStr |
Effects of translational and rotational degrees of freedom on the properties of model water |
title_full_unstemmed |
Effects of translational and rotational degrees of freedom on the properties of model water |
title_sort |
effects of translational and rotational degrees of freedom on the properties of model water |
publisher |
Institute for Condensed Matter Physics |
series |
Condensed Matter Physics |
issn |
1607-324X |
publishDate |
2015-03-01 |
description |
Molecular dynamics simulations with separate thermostats for rotational and translational motions were used to study the effects of these degrees of freedom on the structure of water at a fixed density. To describe water molecules, we used the SPC/E model. The results indicate that an increase of the rotational temperature, T<sub>R</sub>, causes a significant breaking of the hydrogen bonds. This is not the case, at least not to such an extent, when the translational temperature, T<sub>T</sub>, is raised. The probability of finding an empty spherical cavity (no water molecule present) of a given size, strongly decreases with an increase of T<sub>R</sub>, but this only marginally affects the free energy of the hydrophobe insertion. The excess internal energy increases proportionally with an increase of T<sub>R</sub>, while an increase of T<sub>T</sub> yields a much smaller effect at high temperatures. The diffusion coefficient of water exhibits a non-monotonous behaviour with an increase of the rotational temperature. |
topic |
water structure degrees of freedom molecular dynamics |
url |
http://dx.doi.org/10.5488/CMP.18.13004 |
work_keys_str_mv |
AT tmohoric effectsoftranslationalandrotationaldegreesoffreedomonthepropertiesofmodelwater AT bhribarlee effectsoftranslationalandrotationaldegreesoffreedomonthepropertiesofmodelwater AT vvlachy effectsoftranslationalandrotationaldegreesoffreedomonthepropertiesofmodelwater |
_version_ |
1716765412924850176 |