Effects of translational and rotational degrees of freedom on the properties of model water

Molecular dynamics simulations with separate thermostats for rotational and translational motions were used to study the effects of these degrees of freedom on the structure of water at a fixed density. To describe water molecules, we used the SPC/E model. The results indicate that an increase of th...

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Main Authors: T. Mohorič, B. Hribar-Lee, V. Vlachy
Format: Article
Language:English
Published: Institute for Condensed Matter Physics 2015-03-01
Series:Condensed Matter Physics
Subjects:
Online Access:http://dx.doi.org/10.5488/CMP.18.13004
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spelling doaj-74b32935b6424ac99250ece49665217c2020-11-24T21:06:34ZengInstitute for Condensed Matter PhysicsCondensed Matter Physics1607-324X2015-03-011821300410.5488/CMP.18.13004Effects of translational and rotational degrees of freedom on the properties of model water T. Mohorič B. Hribar-LeeV. VlachyMolecular dynamics simulations with separate thermostats for rotational and translational motions were used to study the effects of these degrees of freedom on the structure of water at a fixed density. To describe water molecules, we used the SPC/E model. The results indicate that an increase of the rotational temperature, T<sub>R</sub>, causes a significant breaking of the hydrogen bonds. This is not the case, at least not to such an extent, when the translational temperature, T<sub>T</sub>, is raised. The probability of finding an empty spherical cavity (no water molecule present) of a given size, strongly decreases with an increase of T<sub>R</sub>, but this only marginally affects the free energy of the hydrophobe insertion. The excess internal energy increases proportionally with an increase of T<sub>R</sub>, while an increase of T<sub>T</sub> yields a much smaller effect at high temperatures. The diffusion coefficient of water exhibits a non-monotonous behaviour with an increase of the rotational temperature.http://dx.doi.org/10.5488/CMP.18.13004water structuredegrees of freedommolecular dynamics
collection DOAJ
language English
format Article
sources DOAJ
author T. Mohorič
B. Hribar-Lee
V. Vlachy
spellingShingle T. Mohorič
B. Hribar-Lee
V. Vlachy
Effects of translational and rotational degrees of freedom on the properties of model water
Condensed Matter Physics
water structure
degrees of freedom
molecular dynamics
author_facet T. Mohorič
B. Hribar-Lee
V. Vlachy
author_sort T. Mohorič
title Effects of translational and rotational degrees of freedom on the properties of model water
title_short Effects of translational and rotational degrees of freedom on the properties of model water
title_full Effects of translational and rotational degrees of freedom on the properties of model water
title_fullStr Effects of translational and rotational degrees of freedom on the properties of model water
title_full_unstemmed Effects of translational and rotational degrees of freedom on the properties of model water
title_sort effects of translational and rotational degrees of freedom on the properties of model water
publisher Institute for Condensed Matter Physics
series Condensed Matter Physics
issn 1607-324X
publishDate 2015-03-01
description Molecular dynamics simulations with separate thermostats for rotational and translational motions were used to study the effects of these degrees of freedom on the structure of water at a fixed density. To describe water molecules, we used the SPC/E model. The results indicate that an increase of the rotational temperature, T<sub>R</sub>, causes a significant breaking of the hydrogen bonds. This is not the case, at least not to such an extent, when the translational temperature, T<sub>T</sub>, is raised. The probability of finding an empty spherical cavity (no water molecule present) of a given size, strongly decreases with an increase of T<sub>R</sub>, but this only marginally affects the free energy of the hydrophobe insertion. The excess internal energy increases proportionally with an increase of T<sub>R</sub>, while an increase of T<sub>T</sub> yields a much smaller effect at high temperatures. The diffusion coefficient of water exhibits a non-monotonous behaviour with an increase of the rotational temperature.
topic water structure
degrees of freedom
molecular dynamics
url http://dx.doi.org/10.5488/CMP.18.13004
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