A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral Agents

The dynamics of hepatitis C virus (HCV) RNA during translation and replication within infected cells were added to a previous age-structured multiscale mathematical model of HCV infection and treatment. The model allows the study of the dynamics of HCV RNA inside infected cells as well as the releas...

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Main Authors: Barbara de M. Quintela, Jessica M. Conway, James M. Hyman, Jeremie Guedj, Rodrigo W. dos Santos, Marcelo Lobosco, Alan S. Perelson
Format: Article
Language:English
Published: Frontiers Media S.A. 2018-04-01
Series:Frontiers in Microbiology
Subjects:
HCV
RNA
Online Access:http://journal.frontiersin.org/article/10.3389/fmicb.2018.00601/full
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spelling doaj-72491e4f9d2c46549a75d5bffd6e06fd2020-11-24T22:24:46ZengFrontiers Media S.A.Frontiers in Microbiology1664-302X2018-04-01910.3389/fmicb.2018.00601348636A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral AgentsBarbara de M. Quintela0Jessica M. Conway1James M. Hyman2Jeremie Guedj3Rodrigo W. dos Santos4Marcelo Lobosco5Alan S. Perelson6FISIOCOMP Laboratory, PPGMC, Universidade Federal de Juiz de Fora, Juiz de Fora, BrazilDepartment of Mathematics and Center for Infectious Disease Dynamics, The Pennsylvania State University, State College, PA, United StatesMathematics Department, Tulane University, New Orleans, LA, United StatesIAME, UMR 1137, Institut National de la Santé et de la Recherche Médicale, Université Paris Diderot, Sorbonne Paris Cité, Paris, FranceFISIOCOMP Laboratory, PPGMC, Universidade Federal de Juiz de Fora, Juiz de Fora, BrazilFISIOCOMP Laboratory, PPGMC, Universidade Federal de Juiz de Fora, Juiz de Fora, BrazilTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, NM, United StatesThe dynamics of hepatitis C virus (HCV) RNA during translation and replication within infected cells were added to a previous age-structured multiscale mathematical model of HCV infection and treatment. The model allows the study of the dynamics of HCV RNA inside infected cells as well as the release of virus from infected cells and the dynamics of subsequent new cell infections. The model was used to fit in vitro data and estimate parameters characterizing HCV replication. This is the first model to our knowledge to consider both positive and negative strands of HCV RNA with an age-structured multiscale modeling approach. Using this model we also studied the effects of direct-acting antiviral agents (DAAs) in blocking HCV RNA intracellular replication and the release of new virions and fit the model to in vivo data obtained from HCV-infected subjects under therapy.http://journal.frontiersin.org/article/10.3389/fmicb.2018.00601/fullcomputational biologyHCVRNADAAsdifferential equations
collection DOAJ
language English
format Article
sources DOAJ
author Barbara de M. Quintela
Jessica M. Conway
James M. Hyman
Jeremie Guedj
Rodrigo W. dos Santos
Marcelo Lobosco
Alan S. Perelson
spellingShingle Barbara de M. Quintela
Jessica M. Conway
James M. Hyman
Jeremie Guedj
Rodrigo W. dos Santos
Marcelo Lobosco
Alan S. Perelson
A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral Agents
Frontiers in Microbiology
computational biology
HCV
RNA
DAAs
differential equations
author_facet Barbara de M. Quintela
Jessica M. Conway
James M. Hyman
Jeremie Guedj
Rodrigo W. dos Santos
Marcelo Lobosco
Alan S. Perelson
author_sort Barbara de M. Quintela
title A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral Agents
title_short A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral Agents
title_full A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral Agents
title_fullStr A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral Agents
title_full_unstemmed A New Age-Structured Multiscale Model of the Hepatitis C Virus Life-Cycle During Infection and Therapy With Direct-Acting Antiviral Agents
title_sort new age-structured multiscale model of the hepatitis c virus life-cycle during infection and therapy with direct-acting antiviral agents
publisher Frontiers Media S.A.
series Frontiers in Microbiology
issn 1664-302X
publishDate 2018-04-01
description The dynamics of hepatitis C virus (HCV) RNA during translation and replication within infected cells were added to a previous age-structured multiscale mathematical model of HCV infection and treatment. The model allows the study of the dynamics of HCV RNA inside infected cells as well as the release of virus from infected cells and the dynamics of subsequent new cell infections. The model was used to fit in vitro data and estimate parameters characterizing HCV replication. This is the first model to our knowledge to consider both positive and negative strands of HCV RNA with an age-structured multiscale modeling approach. Using this model we also studied the effects of direct-acting antiviral agents (DAAs) in blocking HCV RNA intracellular replication and the release of new virions and fit the model to in vivo data obtained from HCV-infected subjects under therapy.
topic computational biology
HCV
RNA
DAAs
differential equations
url http://journal.frontiersin.org/article/10.3389/fmicb.2018.00601/full
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