A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies
Background: The limited diagnostic accuracy of biomarkers in children at risk of a serious bacterial infection (SBI) might be due to the imperfect reference standard of SBI. We aimed to evaluate the diagnostic performance of a new classification algorithm for biomarker discovery in children at risk...
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Frontiers Media S.A.
2021-07-01
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Online Access: | https://www.frontiersin.org/articles/10.3389/fped.2021.688272/full |
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English |
format |
Article |
sources |
DOAJ |
author |
Ruud G. Nijman Ruud G. Nijman Rianne Oostenbrink Henriette A. Moll Climent Casals-Pascual Climent Casals-Pascual Climent Casals-Pascual Ulrich von Both Ulrich von Both Aubrey Cunnington Tisham De Irini Eleftheriou Marieke Emonts Marieke Emonts Marieke Emonts Colin Fink Michiel van der Flier Michiel van der Flier Ronald de Groot Myrsini Kaforou Benno Kohlmaier Taco W. Kuijpers Taco W. Kuijpers Emma Lim Emma Lim Ian K. Maconochie Stephane Paulus Stephane Paulus Federico Martinon-Torres Marko Pokorn Marko Pokorn Sam T. Romaine Irene Rivero Calle Luregn J. Schlapbach Luregn J. Schlapbach Frank J. Smit Maria Tsolia Effua Usuf Victoria J. Wright Shunmay Yeung Dace Zavadska Werner Zenz Michael Levin Jethro A. Herberg Enitan D. Carrol Enitan D. Carrol Enitan D. Carrol The PERFORM consortium (Personalized Risk assessment in febrile children to optimize Real-life Management across the European Union) |
spellingShingle |
Ruud G. Nijman Ruud G. Nijman Rianne Oostenbrink Henriette A. Moll Climent Casals-Pascual Climent Casals-Pascual Climent Casals-Pascual Ulrich von Both Ulrich von Both Aubrey Cunnington Tisham De Irini Eleftheriou Marieke Emonts Marieke Emonts Marieke Emonts Colin Fink Michiel van der Flier Michiel van der Flier Ronald de Groot Myrsini Kaforou Benno Kohlmaier Taco W. Kuijpers Taco W. Kuijpers Emma Lim Emma Lim Ian K. Maconochie Stephane Paulus Stephane Paulus Federico Martinon-Torres Marko Pokorn Marko Pokorn Sam T. Romaine Irene Rivero Calle Luregn J. Schlapbach Luregn J. Schlapbach Frank J. Smit Maria Tsolia Effua Usuf Victoria J. Wright Shunmay Yeung Dace Zavadska Werner Zenz Michael Levin Jethro A. Herberg Enitan D. Carrol Enitan D. Carrol Enitan D. Carrol The PERFORM consortium (Personalized Risk assessment in febrile children to optimize Real-life Management across the European Union) A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies Frontiers in Pediatrics serious bacterial infection children biomarkers sepsis clinical phenotypes |
author_facet |
Ruud G. Nijman Ruud G. Nijman Rianne Oostenbrink Henriette A. Moll Climent Casals-Pascual Climent Casals-Pascual Climent Casals-Pascual Ulrich von Both Ulrich von Both Aubrey Cunnington Tisham De Irini Eleftheriou Marieke Emonts Marieke Emonts Marieke Emonts Colin Fink Michiel van der Flier Michiel van der Flier Ronald de Groot Myrsini Kaforou Benno Kohlmaier Taco W. Kuijpers Taco W. Kuijpers Emma Lim Emma Lim Ian K. Maconochie Stephane Paulus Stephane Paulus Federico Martinon-Torres Marko Pokorn Marko Pokorn Sam T. Romaine Irene Rivero Calle Luregn J. Schlapbach Luregn J. Schlapbach Frank J. Smit Maria Tsolia Effua Usuf Victoria J. Wright Shunmay Yeung Dace Zavadska Werner Zenz Michael Levin Jethro A. Herberg Enitan D. Carrol Enitan D. Carrol Enitan D. Carrol The PERFORM consortium (Personalized Risk assessment in febrile children to optimize Real-life Management across the European Union) |
author_sort |
Ruud G. Nijman |
title |
A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies |
title_short |
A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies |
title_full |
A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies |
title_fullStr |
A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies |
title_full_unstemmed |
A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker Studies |
title_sort |
novel framework for phenotyping children with suspected or confirmed infection for future biomarker studies |
publisher |
Frontiers Media S.A. |
series |
Frontiers in Pediatrics |
issn |
2296-2360 |
publishDate |
2021-07-01 |
description |
Background: The limited diagnostic accuracy of biomarkers in children at risk of a serious bacterial infection (SBI) might be due to the imperfect reference standard of SBI. We aimed to evaluate the diagnostic performance of a new classification algorithm for biomarker discovery in children at risk of SBI.Methods: We used data from five previously published, prospective observational biomarker discovery studies, which included patients aged 0– <16 years: the Alder Hey emergency department (n = 1,120), Alder Hey pediatric intensive care unit (n = 355), Erasmus emergency department (n = 1,993), Maasstad emergency department (n = 714) and St. Mary's hospital (n = 200) cohorts. Biomarkers including procalcitonin (PCT) (4 cohorts), neutrophil gelatinase-associated lipocalin-2 (NGAL) (3 cohorts) and resistin (2 cohorts) were compared for their ability to classify patients according to current standards (dichotomous classification of SBI vs. non-SBI), vs. a proposed PERFORM classification algorithm that assign patients to one of eleven categories. These categories were based on clinical phenotype, test outcomes and C-reactive protein level and accounted for the uncertainty of final diagnosis in many febrile children. The success of the biomarkers was measured by the Area under the receiver operating Curves (AUCs) when they were used individually or in combination.Results: Using the new PERFORM classification system, patients with clinically confident bacterial diagnosis (“definite bacterial” category) had significantly higher levels of PCT, NGAL and resistin compared with those with a clinically confident viral diagnosis (“definite viral” category). Patients with diagnostic uncertainty had biomarker concentrations that varied across the spectrum. AUCs were higher for classification of “definite bacterial” vs. “definite viral” following the PERFORM algorithm than using the “SBI” vs. “non-SBI” classification; summary AUC for PCT was 0.77 (95% CI 0.72–0.82) vs. 0.70 (95% CI 0.65–0.75); for NGAL this was 0.80 (95% CI 0.69–0.91) vs. 0.70 (95% CI 0.58–0.81); for resistin this was 0.68 (95% CI 0.61–0.75) vs. 0.64 (0.58–0.69) The three biomarkers combined had summary AUC of 0.83 (0.77–0.89) for “definite bacterial” vs. “definite viral” infections and 0.71 (0.67–0.74) for “SBI” vs. “non-SBI.”Conclusion: Biomarkers of bacterial infection were strongly associated with the diagnostic categories using the PERFORM classification system in five independent cohorts. Our proposed algorithm provides a novel framework for phenotyping children with suspected or confirmed infection for future biomarker studies. |
topic |
serious bacterial infection children biomarkers sepsis clinical phenotypes |
url |
https://www.frontiersin.org/articles/10.3389/fped.2021.688272/full |
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doaj-71fb98129e7c4efcb49b119322fd4ac22021-07-28T14:51:57ZengFrontiers Media S.A.Frontiers in Pediatrics2296-23602021-07-01910.3389/fped.2021.688272688272A Novel Framework for Phenotyping Children With Suspected or Confirmed Infection for Future Biomarker StudiesRuud G. Nijman0Ruud G. Nijman1Rianne Oostenbrink2Henriette A. Moll3Climent Casals-Pascual4Climent Casals-Pascual5Climent Casals-Pascual6Ulrich von Both7Ulrich von Both8Aubrey Cunnington9Tisham De10Irini Eleftheriou11Marieke Emonts12Marieke Emonts13Marieke Emonts14Colin Fink15Michiel van der Flier16Michiel van der Flier17Ronald de Groot18Myrsini Kaforou19Benno Kohlmaier20Taco W. Kuijpers21Taco W. Kuijpers22Emma Lim23Emma Lim24Ian K. Maconochie25Stephane Paulus26Stephane Paulus27Federico Martinon-Torres28Marko Pokorn29Marko Pokorn30Sam T. Romaine31Irene Rivero Calle32Luregn J. Schlapbach33Luregn J. Schlapbach34Frank J. Smit35Maria Tsolia36Effua Usuf37Victoria J. Wright38Shunmay Yeung39Dace Zavadska40Werner Zenz41Michael Levin42Jethro A. Herberg43Enitan D. Carrol44Enitan D. Carrol45Enitan D. Carrol46The PERFORM consortium (Personalized Risk assessment in febrile children to optimize Real-life Management across the European Union)Section of Pediatric Infectious Disease, Department of Infectious Disease, Faculty of Medicine, Imperial College of Science, Technology and Medicine, London, United KingdomDepartment of Pediatric Accident and Emergency, Imperial College NHS Healthcare Trust, London, United KingdomDepartment of General Pediatrics, Erasmus MC-Sophia Children's Hospital, Rotterdam, NetherlandsDepartment of General Pediatrics, Erasmus MC-Sophia Children's Hospital, Rotterdam, NetherlandsNuffield Department of Medicine, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United KingdomDepartment of Clinical Microbiology, Hospital Clínic de Barcelona, Biomedical Diagnostic Centre, Barcelona, SpainISGlobal, Barcelona Institute for Global Health, Barcelona, SpainDivision of Pediatric Infectious Diseases, Dr. von Hauner Children's Hospital, University Hospital, Ludwig-Maximilians-University, Munich, GermanyGerman Centre for Infection Research, DZIF, Partner Site Munich, Munich, GermanySection of Pediatric Infectious Disease, Department of Infectious Disease, Faculty of Medicine, Imperial College of Science, Technology and Medicine, London, United KingdomSection of Pediatric Infectious Disease, Department of Infectious Disease, Faculty of Medicine, Imperial College of Science, Technology and Medicine, London, United KingdomSecond Department of Pediatrics, P. and A. Kyriakou Children's Hospital, National and Kapodistrian University of Athens, Athens, Greece0Pediatric Immunology, Infectious Diseases and Allergy Department, Great North Children's Hospital, Newcastle upon Tyne Hospitals Foundation Trust, Newcastle upon Tyne, United Kingdom1Population Health Sciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom2National Institute for Health Research Newcastle Biomedical Research Centre Based at Newcastle upon Tyne Hospitals NHS Trust, Newcastle University, Newcastle upon Tyne, United Kingdom3Micropathology Ltd., Warwick, United Kingdom4Section Pediatric Infectious Diseases, Laboratory of Medical Immunology, Pediatric Infectious Diseases and Immunology, Radboud Centre for Infectious Diseases, Amalia Children's Hospital, Radboud Institute for Molecular Life Sciences, Radboud University Medical Centre, Nijmegen, Netherlands5Pediatric Infectious Diseases and Immunology, Wilhelmina Children's Hospital, University Medical Centre Utrecht, Utrecht, Netherlands4Section Pediatric Infectious Diseases, Laboratory of Medical Immunology, Pediatric Infectious Diseases and Immunology, Radboud Centre for Infectious Diseases, Amalia Children's Hospital, Radboud Institute for Molecular Life Sciences, Radboud University Medical Centre, Nijmegen, NetherlandsSection of Pediatric Infectious Disease, Department of Infectious Disease, Faculty of Medicine, Imperial College of Science, Technology and Medicine, London, United Kingdom6Department of General Pediatrics, Medical University of Graz, Graz, Austria7Department of Pediatric Immunology, Rheumatology and Infectious Diseases, Amsterdam University Medical Center, Location Academic Medical Centre, University of Amsterdam, Amsterdam, Netherlands8Landsteiner Laboratory at the Amsterdam Medical Centre, Sanquin Research Institute, University of Amsterdam, Amsterdam, Netherlands0Pediatric Immunology, Infectious Diseases and Allergy Department, Great North Children's Hospital, Newcastle upon Tyne Hospitals Foundation Trust, Newcastle upon Tyne, United Kingdom1Population Health Sciences Institute, Newcastle University, Newcastle upon Tyne, United KingdomDepartment of Pediatric Accident and Emergency, Imperial College NHS Healthcare Trust, London, United Kingdom9Department of Pediatrics, Children's Hospital, John Radcliffe, University of Oxford, Level 2, Oxford, United Kingdom0Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom1Genetics, Vaccines, Infections and Pediatrics Research Group, Hospital Clínico Universitario de Santiago de Compostela, Santiago de Compostela, Spain2Department of Infectious Diseases, University Medical Centre Ljubljana, Univerzitetni Klinični Centre, Ljubljana, Slovenia3Department of Infectious Diseases and Epidemiology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia0Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom1Genetics, Vaccines, Infections and Pediatrics Research Group, Hospital Clínico Universitario de Santiago de Compostela, Santiago de Compostela, Spain4Department of Intensive Care and Neonatology, Children's Research Center, University Children's Hospital Zurich, Zurich, Switzerland5Child Health Research Centre, The University of Queensland, Brisbane, QLD, Australia6Department of Pediatrics, Maasstad Hospital, Rotterdam, NetherlandsGerman Centre for Infection Research, DZIF, Partner Site Munich, Munich, Germany7Child Survival, Medical Research Council: The Gambia Unit, Fajara, GambiaSection of Pediatric Infectious Disease, Department of Infectious Disease, Faculty of Medicine, Imperial College of Science, Technology and Medicine, London, United Kingdom8Faculty of Tropical and Infectious Disease, London School of Hygiene and Tropical Medicine, London, United Kingdom9Department of Pediatrics, Children Clinical University Hospital, Rigas Stradina Universitāte, Riga, Latvia6Department of General Pediatrics, Medical University of Graz, Graz, AustriaSection of Pediatric Infectious Disease, Department of Infectious Disease, Faculty of Medicine, Imperial College of Science, Technology and Medicine, London, United KingdomSection of Pediatric Infectious Disease, Department of Infectious Disease, Faculty of Medicine, Imperial College of Science, Technology and Medicine, London, United Kingdom0Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom0Alder Hey Children's NHS Foundation Trust, Liverpool, United Kingdom1Liverpool Health Partners, Liverpool, United KingdomBackground: The limited diagnostic accuracy of biomarkers in children at risk of a serious bacterial infection (SBI) might be due to the imperfect reference standard of SBI. We aimed to evaluate the diagnostic performance of a new classification algorithm for biomarker discovery in children at risk of SBI.Methods: We used data from five previously published, prospective observational biomarker discovery studies, which included patients aged 0– <16 years: the Alder Hey emergency department (n = 1,120), Alder Hey pediatric intensive care unit (n = 355), Erasmus emergency department (n = 1,993), Maasstad emergency department (n = 714) and St. Mary's hospital (n = 200) cohorts. Biomarkers including procalcitonin (PCT) (4 cohorts), neutrophil gelatinase-associated lipocalin-2 (NGAL) (3 cohorts) and resistin (2 cohorts) were compared for their ability to classify patients according to current standards (dichotomous classification of SBI vs. non-SBI), vs. a proposed PERFORM classification algorithm that assign patients to one of eleven categories. These categories were based on clinical phenotype, test outcomes and C-reactive protein level and accounted for the uncertainty of final diagnosis in many febrile children. The success of the biomarkers was measured by the Area under the receiver operating Curves (AUCs) when they were used individually or in combination.Results: Using the new PERFORM classification system, patients with clinically confident bacterial diagnosis (“definite bacterial” category) had significantly higher levels of PCT, NGAL and resistin compared with those with a clinically confident viral diagnosis (“definite viral” category). Patients with diagnostic uncertainty had biomarker concentrations that varied across the spectrum. AUCs were higher for classification of “definite bacterial” vs. “definite viral” following the PERFORM algorithm than using the “SBI” vs. “non-SBI” classification; summary AUC for PCT was 0.77 (95% CI 0.72–0.82) vs. 0.70 (95% CI 0.65–0.75); for NGAL this was 0.80 (95% CI 0.69–0.91) vs. 0.70 (95% CI 0.58–0.81); for resistin this was 0.68 (95% CI 0.61–0.75) vs. 0.64 (0.58–0.69) The three biomarkers combined had summary AUC of 0.83 (0.77–0.89) for “definite bacterial” vs. “definite viral” infections and 0.71 (0.67–0.74) for “SBI” vs. “non-SBI.”Conclusion: Biomarkers of bacterial infection were strongly associated with the diagnostic categories using the PERFORM classification system in five independent cohorts. Our proposed algorithm provides a novel framework for phenotyping children with suspected or confirmed infection for future biomarker studies.https://www.frontiersin.org/articles/10.3389/fped.2021.688272/fullserious bacterial infectionchildrenbiomarkerssepsisclinical phenotypes |