Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning Models

For decades, tuberculosis (TB), a potentially serious infectious lung disease, continues to be a leading cause of worldwide death. Proven to be conveniently efficient and cost-effective, chest X-ray (CXR) has become the preliminary medical imaging tool for detecting TB. Arguably, the quality of TB d...

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Main Authors: Ruihua Guo, Kalpdrum Passi, Chakresh Kumar Jain
Format: Article
Language:English
Published: Frontiers Media S.A. 2020-10-01
Series:Frontiers in Artificial Intelligence
Subjects:
Online Access:https://www.frontiersin.org/article/10.3389/frai.2020.583427/full
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spelling doaj-71a3d9d7ba914c658ce92661397193242020-11-25T03:59:17ZengFrontiers Media S.A.Frontiers in Artificial Intelligence2624-82122020-10-01310.3389/frai.2020.583427583427Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning ModelsRuihua Guo0Kalpdrum Passi1Chakresh Kumar Jain2Department of Mathematics and Computer Science, Laurentian University, Greater Sudbury, ON, CanadaDepartment of Mathematics and Computer Science, Laurentian University, Greater Sudbury, ON, CanadaDepartment of Biotechnology, Jaypee Institute of Information Technology, Noida, IndiaFor decades, tuberculosis (TB), a potentially serious infectious lung disease, continues to be a leading cause of worldwide death. Proven to be conveniently efficient and cost-effective, chest X-ray (CXR) has become the preliminary medical imaging tool for detecting TB. Arguably, the quality of TB diagnosis will improve vastly with automated CXRs for TB detection and the localization of suspected areas, which may manifest TB. The current line of research aims to develop an efficient computer-aided detection system that will support doctors (and radiologists) to become well-informed when making TB diagnosis from patients' CXRs. Here, an integrated process to improve TB diagnostics via convolutional neural networks (CNNs) and localization in CXRs via deep-learning models is proposed. Three key steps in the TB diagnostics process include (a) modifying CNN model structures, (b) model fine-tuning via artificial bee colony algorithm, and (c) the implementation of linear average–based ensemble method. Comparisons of the overall performance are made across all three steps among the experimented deep CNN models on two publicly available CXR datasets, namely, the Shenzhen Hospital CXR dataset and the National Institutes of Health CXR dataset. Validated performance includes detecting CXR abnormalities and differentiating among seven TB-related manifestations (consolidation, effusion, fibrosis, infiltration, mass, nodule, and pleural thickening). Importantly, class activation mapping is employed to inform a visual interpretation of the diagnostic result by localizing the detected lung abnormality manifestation on CXR. Compared to the state-of-the-art, the resulting approach showcases an outstanding performance both in the lung abnormality detection and the specific TB-related manifestation diagnosis vis-à-vis the localization in CXRs.https://www.frontiersin.org/article/10.3389/frai.2020.583427/fulltuberculosischest X-raymanifestationslocalizationconvolutional neural networksartificial bee colony algorithm
collection DOAJ
language English
format Article
sources DOAJ
author Ruihua Guo
Kalpdrum Passi
Chakresh Kumar Jain
spellingShingle Ruihua Guo
Kalpdrum Passi
Chakresh Kumar Jain
Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning Models
Frontiers in Artificial Intelligence
tuberculosis
chest X-ray
manifestations
localization
convolutional neural networks
artificial bee colony algorithm
author_facet Ruihua Guo
Kalpdrum Passi
Chakresh Kumar Jain
author_sort Ruihua Guo
title Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning Models
title_short Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning Models
title_full Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning Models
title_fullStr Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning Models
title_full_unstemmed Tuberculosis Diagnostics and Localization in Chest X-Rays via Deep Learning Models
title_sort tuberculosis diagnostics and localization in chest x-rays via deep learning models
publisher Frontiers Media S.A.
series Frontiers in Artificial Intelligence
issn 2624-8212
publishDate 2020-10-01
description For decades, tuberculosis (TB), a potentially serious infectious lung disease, continues to be a leading cause of worldwide death. Proven to be conveniently efficient and cost-effective, chest X-ray (CXR) has become the preliminary medical imaging tool for detecting TB. Arguably, the quality of TB diagnosis will improve vastly with automated CXRs for TB detection and the localization of suspected areas, which may manifest TB. The current line of research aims to develop an efficient computer-aided detection system that will support doctors (and radiologists) to become well-informed when making TB diagnosis from patients' CXRs. Here, an integrated process to improve TB diagnostics via convolutional neural networks (CNNs) and localization in CXRs via deep-learning models is proposed. Three key steps in the TB diagnostics process include (a) modifying CNN model structures, (b) model fine-tuning via artificial bee colony algorithm, and (c) the implementation of linear average–based ensemble method. Comparisons of the overall performance are made across all three steps among the experimented deep CNN models on two publicly available CXR datasets, namely, the Shenzhen Hospital CXR dataset and the National Institutes of Health CXR dataset. Validated performance includes detecting CXR abnormalities and differentiating among seven TB-related manifestations (consolidation, effusion, fibrosis, infiltration, mass, nodule, and pleural thickening). Importantly, class activation mapping is employed to inform a visual interpretation of the diagnostic result by localizing the detected lung abnormality manifestation on CXR. Compared to the state-of-the-art, the resulting approach showcases an outstanding performance both in the lung abnormality detection and the specific TB-related manifestation diagnosis vis-à-vis the localization in CXRs.
topic tuberculosis
chest X-ray
manifestations
localization
convolutional neural networks
artificial bee colony algorithm
url https://www.frontiersin.org/article/10.3389/frai.2020.583427/full
work_keys_str_mv AT ruihuaguo tuberculosisdiagnosticsandlocalizationinchestxraysviadeeplearningmodels
AT kalpdrumpassi tuberculosisdiagnosticsandlocalizationinchestxraysviadeeplearningmodels
AT chakreshkumarjain tuberculosisdiagnosticsandlocalizationinchestxraysviadeeplearningmodels
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