A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopy

Abstract The nuclear magnetic resonance (NMR) spectroscopy has fruitful applications in chemistry, biology and life sciences, but suffers from long acquisition time. Non‐uniform sampling is a typical fast NMR method by undersampling the time‐domain data of the spectrum but need to restore the fully...

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Main Authors: Zhangren Tu, Zi Wang, Jiaying Zhan, Yihui Huang, Xiaofeng Du, Min Xiao, Xiaobo Qu, Di Guo
Format: Article
Language:English
Published: Wiley 2021-02-01
Series:IET Signal Processing
Online Access:https://doi.org/10.1049/sil2.12010
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spelling doaj-6f8b142f64ed4280857246ab9df6c5672021-08-02T08:25:01ZengWileyIET Signal Processing1751-96751751-96832021-02-01151142710.1049/sil2.12010A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopyZhangren Tu0Zi Wang1Jiaying Zhan2Yihui Huang3Xiaofeng Du4Min Xiao5Xiaobo Qu6Di Guo7School of Computer and Information Engineering Xiamen University of Technology Xiamen People's Republic of ChinaDepartment of Electronic Science Xiamen University Xiamen People's Republic of ChinaSchool of Computer and Information Engineering Xiamen University of Technology Xiamen People's Republic of ChinaDepartment of Electronic Science Xiamen University Xiamen People's Republic of ChinaSchool of Computer and Information Engineering Xiamen University of Technology Xiamen People's Republic of ChinaSchool of Opto‐Electronic and Communication Engineering Xiamen University of Technology Xiamen People's Republic of ChinaDepartment of Electronic Science Xiamen University Xiamen People's Republic of ChinaSchool of Computer and Information Engineering Xiamen University of Technology Xiamen People's Republic of ChinaAbstract The nuclear magnetic resonance (NMR) spectroscopy has fruitful applications in chemistry, biology and life sciences, but suffers from long acquisition time. Non‐uniform sampling is a typical fast NMR method by undersampling the time‐domain data of the spectrum but need to restore the fully sampled data with proper constraints. The state‐of‐the‐art method is to model the time‐domain data as the sum of exponential functions and reconstruct these data by enforcing the low rankness of Hankel matrix. However, this method is solved by minimizing the sum of singular values of the Hankel matrix, which leads to the distortion of low‐intensity spectral peaks. Here, a low rank Hankel matrix reconstruction approach with a partial sum of singular values is proposed to protect small singular values, which can faithfully reconstruct all peaks. Results on both synthetic and realistic NMR spectroscopy show that the proposed method can reconstruct a more consistent spectrum to the fully sampled one than other state‐of‐the‐art methods and have particular advantages on preserving low‐intensity peaks.https://doi.org/10.1049/sil2.12010
collection DOAJ
language English
format Article
sources DOAJ
author Zhangren Tu
Zi Wang
Jiaying Zhan
Yihui Huang
Xiaofeng Du
Min Xiao
Xiaobo Qu
Di Guo
spellingShingle Zhangren Tu
Zi Wang
Jiaying Zhan
Yihui Huang
Xiaofeng Du
Min Xiao
Xiaobo Qu
Di Guo
A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopy
IET Signal Processing
author_facet Zhangren Tu
Zi Wang
Jiaying Zhan
Yihui Huang
Xiaofeng Du
Min Xiao
Xiaobo Qu
Di Guo
author_sort Zhangren Tu
title A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopy
title_short A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopy
title_full A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopy
title_fullStr A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopy
title_full_unstemmed A partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled NMR spectroscopy
title_sort partial sum of singular‐value‐based reconstruction method for non‐uniformly sampled nmr spectroscopy
publisher Wiley
series IET Signal Processing
issn 1751-9675
1751-9683
publishDate 2021-02-01
description Abstract The nuclear magnetic resonance (NMR) spectroscopy has fruitful applications in chemistry, biology and life sciences, but suffers from long acquisition time. Non‐uniform sampling is a typical fast NMR method by undersampling the time‐domain data of the spectrum but need to restore the fully sampled data with proper constraints. The state‐of‐the‐art method is to model the time‐domain data as the sum of exponential functions and reconstruct these data by enforcing the low rankness of Hankel matrix. However, this method is solved by minimizing the sum of singular values of the Hankel matrix, which leads to the distortion of low‐intensity spectral peaks. Here, a low rank Hankel matrix reconstruction approach with a partial sum of singular values is proposed to protect small singular values, which can faithfully reconstruct all peaks. Results on both synthetic and realistic NMR spectroscopy show that the proposed method can reconstruct a more consistent spectrum to the fully sampled one than other state‐of‐the‐art methods and have particular advantages on preserving low‐intensity peaks.
url https://doi.org/10.1049/sil2.12010
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