Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflow

The analysis of environmental microplastic particles using FTIR microscopy is a challenging task, due to the very high number of individual particles within a single sample. Therefore, automatable, fast and robust approaches are highly requested. Micro particles were commonly enriched on filters, an...

Full description

Bibliographic Details
Main Authors: Gerrit Renner, Torsten C. Schmidt, Jürgen Schram
Format: Article
Language:English
Published: Elsevier 2020-01-01
Series:MethodsX
Subjects:
Online Access:http://www.sciencedirect.com/science/article/pii/S2215016119303188
id doaj-6f7ad7d3ee38408da164f8574898c5ef
record_format Article
spelling doaj-6f7ad7d3ee38408da164f8574898c5ef2021-01-02T05:09:54ZengElsevierMethodsX2215-01612020-01-017100742Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflowGerrit Renner0Torsten C. Schmidt1Jürgen Schram2Instrumental Analytical and EnvironmentalChemistry, Faculty of Chemistry, Niederrhein University of Applied Sciences, Frankenring 20, D-47798, Krefeld, Germany; Instrumental Analytical Chemistry and Centre for Water and Environmental Research (ZWU), University of Duisburg-Essen, Universitätsstr. 5, D-45141, Essen, Germany; Corresponding author at: Instrumental Analytical and Environmental Chemistry, Faculty of Chemistry, Niederrhein University of Applied Sciences, Frankenring 20, D-47798, Krefeld, Germany.Instrumental Analytical Chemistry and Centre for Water and Environmental Research (ZWU), University of Duisburg-Essen, Universitätsstr. 5, D-45141, Essen, GermanyInstrumental Analytical and EnvironmentalChemistry, Faculty of Chemistry, Niederrhein University of Applied Sciences, Frankenring 20, D-47798, Krefeld, GermanyThe analysis of environmental microplastic particles using FTIR microscopy is a challenging task, due to the very high number of individual particles within a single sample. Therefore, automatable, fast and robust approaches are highly requested. Micro particles were commonly enriched on filters, and sub- or the whole filter area was investigated, which took more than 20h and produced millions of data, which had to be evaluated. This paper presents a new approach of such filter area analysis using an intelligent algorithm to measure only those spots on a filter that would produce evaluable FTIR data. Empty spaces or IR absorbers like carbon black particles were not measured which successfully reduced the total analysis time from 50h to 7h. The presented method is based on system independent Python workflow and can easily be implemented on other FTIR systems. • Fast and intelligent FTIR microscopy area mapping without FPA detector • Total time reduction from 50 h to 7 h • Platform independent approach based on Pythonhttp://www.sciencedirect.com/science/article/pii/S2215016119303188MicroplasitcsMappingPythonFTIR microscopyChemometrics
collection DOAJ
language English
format Article
sources DOAJ
author Gerrit Renner
Torsten C. Schmidt
Jürgen Schram
spellingShingle Gerrit Renner
Torsten C. Schmidt
Jürgen Schram
Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflow
MethodsX
Microplasitcs
Mapping
Python
FTIR microscopy
Chemometrics
author_facet Gerrit Renner
Torsten C. Schmidt
Jürgen Schram
author_sort Gerrit Renner
title Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflow
title_short Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflow
title_full Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflow
title_fullStr Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflow
title_full_unstemmed Automated rapid & intelligent microplastics mapping by FTIR microscopy: A Python–based workflow
title_sort automated rapid & intelligent microplastics mapping by ftir microscopy: a python–based workflow
publisher Elsevier
series MethodsX
issn 2215-0161
publishDate 2020-01-01
description The analysis of environmental microplastic particles using FTIR microscopy is a challenging task, due to the very high number of individual particles within a single sample. Therefore, automatable, fast and robust approaches are highly requested. Micro particles were commonly enriched on filters, and sub- or the whole filter area was investigated, which took more than 20h and produced millions of data, which had to be evaluated. This paper presents a new approach of such filter area analysis using an intelligent algorithm to measure only those spots on a filter that would produce evaluable FTIR data. Empty spaces or IR absorbers like carbon black particles were not measured which successfully reduced the total analysis time from 50h to 7h. The presented method is based on system independent Python workflow and can easily be implemented on other FTIR systems. • Fast and intelligent FTIR microscopy area mapping without FPA detector • Total time reduction from 50 h to 7 h • Platform independent approach based on Python
topic Microplasitcs
Mapping
Python
FTIR microscopy
Chemometrics
url http://www.sciencedirect.com/science/article/pii/S2215016119303188
work_keys_str_mv AT gerritrenner automatedrapidampintelligentmicroplasticsmappingbyftirmicroscopyapythonbasedworkflow
AT torstencschmidt automatedrapidampintelligentmicroplasticsmappingbyftirmicroscopyapythonbasedworkflow
AT jurgenschram automatedrapidampintelligentmicroplasticsmappingbyftirmicroscopyapythonbasedworkflow
_version_ 1724359514104266752