Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR Spectroscopy

Attenuated total reflection–Fourier transform infrared (ATR–FTIR) spectroscopy is a simple, cheap, and fast method to collect chemical compositional information from microalgae. However, (semi)quantitative evaluation of the collected data can be daunting. In this work, ATR–FTIR spectroscopy was used...

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Main Authors: Lorenza Ferro, Zivan Gojkovic, András Gorzsás, Christiane Funk
Format: Article
Language:English
Published: MDPI AG 2019-09-01
Series:Molecules
Subjects:
Online Access:https://www.mdpi.com/1420-3049/24/18/3237
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spelling doaj-6af6ab8c55004684899be27a374a150b2020-11-25T01:23:30ZengMDPI AGMolecules1420-30492019-09-012418323710.3390/molecules24183237molecules24183237Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR SpectroscopyLorenza Ferro0Zivan Gojkovic1András Gorzsás2Christiane Funk3Department of Chemistry, Umeå University, 901 87 Umeå, SwedenDepartment of Chemistry, Umeå University, 901 87 Umeå, SwedenDepartment of Chemistry, Umeå University, 901 87 Umeå, SwedenDepartment of Chemistry, Umeå University, 901 87 Umeå, SwedenAttenuated total reflection–Fourier transform infrared (ATR–FTIR) spectroscopy is a simple, cheap, and fast method to collect chemical compositional information from microalgae. However, (semi)quantitative evaluation of the collected data can be daunting. In this work, ATR–FTIR spectroscopy was used to monitor changes of protein, lipid, and carbohydrate content in seven green microalgae grown under nitrogen starvation. Three statistical methods—univariate linear regression analysis (ULRA), orthogonal partial least squares (OPLS), and multivariate curve resolution-alternating least squares (MCR–ALS)—were compared in their ability to model and predict the concentration of these compounds in the biomass. OPLS was found superior, since it i) included all three compounds simultaneously; ii) explained variations in the data very well; iii) had excellent prediction accuracy for proteins and lipids, and acceptable for carbohydrates; and iv) was able to discriminate samples based on cultivation stage and type of storage compounds accumulated in the cells. ULRA models worked well for the determination of proteins and lipids, but carbohydrates could only be estimated if already determined protein contents were used for scaling. Results obtained by MCR–ALS were similar to ULRA, however, this method is considerably easier to perform and interpret than the more abstract statistical/chemometric methods. FTIR-spectroscopy-based models allow high-throughput, cost-effective, and rapid estimation of biomass composition of green microalgae.https://www.mdpi.com/1420-3049/24/18/3237microalgaeFTIR spectroscopystatistical methodscarbohydrateslipidsproteinsnitrogen starvation
collection DOAJ
language English
format Article
sources DOAJ
author Lorenza Ferro
Zivan Gojkovic
András Gorzsás
Christiane Funk
spellingShingle Lorenza Ferro
Zivan Gojkovic
András Gorzsás
Christiane Funk
Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR Spectroscopy
Molecules
microalgae
FTIR spectroscopy
statistical methods
carbohydrates
lipids
proteins
nitrogen starvation
author_facet Lorenza Ferro
Zivan Gojkovic
András Gorzsás
Christiane Funk
author_sort Lorenza Ferro
title Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR Spectroscopy
title_short Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR Spectroscopy
title_full Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR Spectroscopy
title_fullStr Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR Spectroscopy
title_full_unstemmed Statistical Methods for Rapid Quantification of Proteins, Lipids, and Carbohydrates in Nordic Microalgal Species Using ATR–FTIR Spectroscopy
title_sort statistical methods for rapid quantification of proteins, lipids, and carbohydrates in nordic microalgal species using atr–ftir spectroscopy
publisher MDPI AG
series Molecules
issn 1420-3049
publishDate 2019-09-01
description Attenuated total reflection–Fourier transform infrared (ATR–FTIR) spectroscopy is a simple, cheap, and fast method to collect chemical compositional information from microalgae. However, (semi)quantitative evaluation of the collected data can be daunting. In this work, ATR–FTIR spectroscopy was used to monitor changes of protein, lipid, and carbohydrate content in seven green microalgae grown under nitrogen starvation. Three statistical methods—univariate linear regression analysis (ULRA), orthogonal partial least squares (OPLS), and multivariate curve resolution-alternating least squares (MCR–ALS)—were compared in their ability to model and predict the concentration of these compounds in the biomass. OPLS was found superior, since it i) included all three compounds simultaneously; ii) explained variations in the data very well; iii) had excellent prediction accuracy for proteins and lipids, and acceptable for carbohydrates; and iv) was able to discriminate samples based on cultivation stage and type of storage compounds accumulated in the cells. ULRA models worked well for the determination of proteins and lipids, but carbohydrates could only be estimated if already determined protein contents were used for scaling. Results obtained by MCR–ALS were similar to ULRA, however, this method is considerably easier to perform and interpret than the more abstract statistical/chemometric methods. FTIR-spectroscopy-based models allow high-throughput, cost-effective, and rapid estimation of biomass composition of green microalgae.
topic microalgae
FTIR spectroscopy
statistical methods
carbohydrates
lipids
proteins
nitrogen starvation
url https://www.mdpi.com/1420-3049/24/18/3237
work_keys_str_mv AT lorenzaferro statisticalmethodsforrapidquantificationofproteinslipidsandcarbohydratesinnordicmicroalgalspeciesusingatrftirspectroscopy
AT zivangojkovic statisticalmethodsforrapidquantificationofproteinslipidsandcarbohydratesinnordicmicroalgalspeciesusingatrftirspectroscopy
AT andrasgorzsas statisticalmethodsforrapidquantificationofproteinslipidsandcarbohydratesinnordicmicroalgalspeciesusingatrftirspectroscopy
AT christianefunk statisticalmethodsforrapidquantificationofproteinslipidsandcarbohydratesinnordicmicroalgalspeciesusingatrftirspectroscopy
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