Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysis

Abstract Introduction The current diagnosis of Parkinson's disease (PD) comorbidity with depression (DPD) largely depends on clinical evaluation. However, the modality may tend to lack precision in detecting PD with depression. A radiomic approach that combines functional connectivity and activ...

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Main Authors: Xulian Zhang, Xuan Cao, Chen Xue, Jingyi Zheng, Shaojun Zhang, Qingling Huang, Weiguo Liu
Format: Article
Language:English
Published: Wiley 2021-05-01
Series:Brain and Behavior
Subjects:
Online Access:https://doi.org/10.1002/brb3.2103
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spelling doaj-6979c12dd61142feac42d7271708b5572021-05-14T04:41:30ZengWileyBrain and Behavior2162-32792021-05-01115n/an/a10.1002/brb3.2103Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysisXulian Zhang0Xuan Cao1Chen Xue2Jingyi Zheng3Shaojun Zhang4Qingling Huang5Weiguo Liu6Department of Radiology Nanjing Medical University Affiliated Nanjing Brain Hospital Nanjing ChinaDivision of Statistics and Data Science Department of Mathematical Sciences University of Cincinnati Cincinnati USADepartment of Radiology Nanjing Medical University Affiliated Nanjing Brain Hospital Nanjing ChinaDepartment of Mathematics and Statistics Auburn University Auburn USADepartment of Statistics University of Florida Gainesville USADepartment of Radiology Nanjing Medical University Affiliated Nanjing Brain Hospital Nanjing ChinaDepartment of Neurology Nanjing Medical University Affiliated Nanjing Brain Hospital Nanjing ChinaAbstract Introduction The current diagnosis of Parkinson's disease (PD) comorbidity with depression (DPD) largely depends on clinical evaluation. However, the modality may tend to lack precision in detecting PD with depression. A radiomic approach that combines functional connectivity and activity with clinical scores has the potential to achieve accurate and differential diagnosis between PD and DPD. Methods In this study, we aimed to employ the radiomic approach to extract large‐scale features of functional connectivity and activity for differentiating among DPD, PD with no depression (NDPD), and healthy controls (HC). We extracted 6,557 features of five types from all subjects including clinical characteristics, resting‐state functional connectivity (RSFC), amplitude of low‐frequency fluctuation (ALFF), regional homogeneity (ReHo), and voxel‐mirrored homotopic connectivity (VMHC). Lasso, random forest, and support vector machine (SVM) were implemented for feature selection and dimension reduction based on the training sets, and the prediction performance for different methods in the testing sets was compared. Results The results showed that nineteen features were selected for the group of DPD versus HC, 34 features were selected for the group of NDPD versus HC, and 17 features were retained for the group of DPD versus NDPD. In the testing sets, Lasso prediction achieved the accuracies of 0.95, 0.96, and 0.85 for distinguishing between DPD and HC, NDPD and HC, and DPD and NDPD, respectively. Random forest achieved the accuracies of 0.90, 0.82, and 0.90 for distinguishing between DPD and HC, NDPD and HC, and DPD and NDPD, respectively, while SVM yielded the accuracies of 1, 0.86 and 0.65 for distinguishing between DPD and HC, NDPD and HC, and DPD and NDPD, respectively. Conclusions By identifying aberrant functional connectivity and activity as potential biomarkers, the radiomic approach facilitates a deeper understanding and provides new insights into the pathophysiology of DPD to support the clinical diagnosis with high prediction accuracy.https://doi.org/10.1002/brb3.2103depressionmachine learningParkinson's diseaseradiomics
collection DOAJ
language English
format Article
sources DOAJ
author Xulian Zhang
Xuan Cao
Chen Xue
Jingyi Zheng
Shaojun Zhang
Qingling Huang
Weiguo Liu
spellingShingle Xulian Zhang
Xuan Cao
Chen Xue
Jingyi Zheng
Shaojun Zhang
Qingling Huang
Weiguo Liu
Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysis
Brain and Behavior
depression
machine learning
Parkinson's disease
radiomics
author_facet Xulian Zhang
Xuan Cao
Chen Xue
Jingyi Zheng
Shaojun Zhang
Qingling Huang
Weiguo Liu
author_sort Xulian Zhang
title Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysis
title_short Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysis
title_full Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysis
title_fullStr Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysis
title_full_unstemmed Aberrant functional connectivity and activity in Parkinson’s disease and comorbidity with depression based on radiomic analysis
title_sort aberrant functional connectivity and activity in parkinson’s disease and comorbidity with depression based on radiomic analysis
publisher Wiley
series Brain and Behavior
issn 2162-3279
publishDate 2021-05-01
description Abstract Introduction The current diagnosis of Parkinson's disease (PD) comorbidity with depression (DPD) largely depends on clinical evaluation. However, the modality may tend to lack precision in detecting PD with depression. A radiomic approach that combines functional connectivity and activity with clinical scores has the potential to achieve accurate and differential diagnosis between PD and DPD. Methods In this study, we aimed to employ the radiomic approach to extract large‐scale features of functional connectivity and activity for differentiating among DPD, PD with no depression (NDPD), and healthy controls (HC). We extracted 6,557 features of five types from all subjects including clinical characteristics, resting‐state functional connectivity (RSFC), amplitude of low‐frequency fluctuation (ALFF), regional homogeneity (ReHo), and voxel‐mirrored homotopic connectivity (VMHC). Lasso, random forest, and support vector machine (SVM) were implemented for feature selection and dimension reduction based on the training sets, and the prediction performance for different methods in the testing sets was compared. Results The results showed that nineteen features were selected for the group of DPD versus HC, 34 features were selected for the group of NDPD versus HC, and 17 features were retained for the group of DPD versus NDPD. In the testing sets, Lasso prediction achieved the accuracies of 0.95, 0.96, and 0.85 for distinguishing between DPD and HC, NDPD and HC, and DPD and NDPD, respectively. Random forest achieved the accuracies of 0.90, 0.82, and 0.90 for distinguishing between DPD and HC, NDPD and HC, and DPD and NDPD, respectively, while SVM yielded the accuracies of 1, 0.86 and 0.65 for distinguishing between DPD and HC, NDPD and HC, and DPD and NDPD, respectively. Conclusions By identifying aberrant functional connectivity and activity as potential biomarkers, the radiomic approach facilitates a deeper understanding and provides new insights into the pathophysiology of DPD to support the clinical diagnosis with high prediction accuracy.
topic depression
machine learning
Parkinson's disease
radiomics
url https://doi.org/10.1002/brb3.2103
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