Reprogramming the antigen specificity of B cells using genome-editing technologies

We have developed a method to introduce novel paratopes into the human antibody repertoire by modifying the immunoglobulin (Ig) genes of mature B cells directly using genome editing technologies. We used CRISPR-Cas9 in a homology directed repair strategy, to replace the heavy chain (HC) variable reg...

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Main Authors: James E Voss, Alicia Gonzalez-Martin, Raiees Andrabi, Roberta P Fuller, Ben Murrell, Laura E McCoy, Katelyn Porter, Deli Huang, Wenjuan Li, Devin Sok, Khoa Le, Bryan Briney, Morgan Chateau, Geoffrey Rogers, Lars Hangartner, Ann J Feeney, David Nemazee, Paula Cannon, Dennis R Burton
Format: Article
Language:English
Published: eLife Sciences Publications Ltd 2019-01-01
Series:eLife
Subjects:
HIV
Online Access:https://elifesciences.org/articles/42995
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author James E Voss
Alicia Gonzalez-Martin
Raiees Andrabi
Roberta P Fuller
Ben Murrell
Laura E McCoy
Katelyn Porter
Deli Huang
Wenjuan Li
Devin Sok
Khoa Le
Bryan Briney
Morgan Chateau
Geoffrey Rogers
Lars Hangartner
Ann J Feeney
David Nemazee
Paula Cannon
Dennis R Burton
spellingShingle James E Voss
Alicia Gonzalez-Martin
Raiees Andrabi
Roberta P Fuller
Ben Murrell
Laura E McCoy
Katelyn Porter
Deli Huang
Wenjuan Li
Devin Sok
Khoa Le
Bryan Briney
Morgan Chateau
Geoffrey Rogers
Lars Hangartner
Ann J Feeney
David Nemazee
Paula Cannon
Dennis R Burton
Reprogramming the antigen specificity of B cells using genome-editing technologies
eLife
CAR-B
B cell
engineering
HIV
bnAb
vaccine
author_facet James E Voss
Alicia Gonzalez-Martin
Raiees Andrabi
Roberta P Fuller
Ben Murrell
Laura E McCoy
Katelyn Porter
Deli Huang
Wenjuan Li
Devin Sok
Khoa Le
Bryan Briney
Morgan Chateau
Geoffrey Rogers
Lars Hangartner
Ann J Feeney
David Nemazee
Paula Cannon
Dennis R Burton
author_sort James E Voss
title Reprogramming the antigen specificity of B cells using genome-editing technologies
title_short Reprogramming the antigen specificity of B cells using genome-editing technologies
title_full Reprogramming the antigen specificity of B cells using genome-editing technologies
title_fullStr Reprogramming the antigen specificity of B cells using genome-editing technologies
title_full_unstemmed Reprogramming the antigen specificity of B cells using genome-editing technologies
title_sort reprogramming the antigen specificity of b cells using genome-editing technologies
publisher eLife Sciences Publications Ltd
series eLife
issn 2050-084X
publishDate 2019-01-01
description We have developed a method to introduce novel paratopes into the human antibody repertoire by modifying the immunoglobulin (Ig) genes of mature B cells directly using genome editing technologies. We used CRISPR-Cas9 in a homology directed repair strategy, to replace the heavy chain (HC) variable region in B cell lines with that from an HIV broadly neutralizing antibody (bnAb), PG9. Our strategy is designed to function in cells that have undergone VDJ recombination using any combination of variable (V), diversity (D) and joining (J) genes. The modified locus expresses PG9 HC which pairs with native light chains (LCs) resulting in the cell surface expression of HIV specific B cell receptors (BCRs). Endogenous activation-induced cytidine deaminase (AID) in engineered cells allowed for Ig class switching and generated BCR variants with improved HIV neutralizing activity. Thus, BCRs engineered in this way retain the genetic flexibility normally required for affinity maturation during adaptive immune responses. Peripheral blood derived primary B cells from three different donors were edited using this strategy. Engineered cells could bind the PG9 epitope and sequenced mRNA showed PG9 HC transcribed as several different isotypes after culture with CD40 ligand and IL-4.
topic CAR-B
B cell
engineering
HIV
bnAb
vaccine
url https://elifesciences.org/articles/42995
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spelling doaj-672ae969491c41729fd1ce5dbcadba722021-05-05T17:19:37ZengeLife Sciences Publications LtdeLife2050-084X2019-01-01810.7554/eLife.42995Reprogramming the antigen specificity of B cells using genome-editing technologiesJames E Voss0https://orcid.org/0000-0002-4777-1596Alicia Gonzalez-Martin1Raiees Andrabi2Roberta P Fuller3Ben Murrell4Laura E McCoy5Katelyn Porter6Deli Huang7Wenjuan Li8Devin Sok9Khoa Le10Bryan Briney11Morgan Chateau12Geoffrey Rogers13Lars Hangartner14Ann J Feeney15David Nemazee16Paula Cannon17Dennis R Burton18Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United StatesDepartment of Biochemistry, Universidad Autónoma de Madrid (UAM) and Instituto de Investigaciones Biomédicas Alberto Sols (CSIC-UAM), Madrid, SpainDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United StatesDepartment of Medicine, University of California, San Diego, San Diego, United States; Department of Microbiology, Tumor and Cell Biology, Karolinska Institutet, Stockholm, SwedenDivision of Infection and Immunity, University College London, London, United KingdomDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United StatesDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, United StatesDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United StatesDepartment of Molecular Microbiology and Immunology, Keck School of Medicine, University of Southern California, Los Angeles, United StatesDepartment of Immunology and Microbiology, The Scripps Research Institute, La Jolla, United States; International AIDS Vaccine Initiative Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, United States; Scripps Center for HIV/AIDS Vaccine Immunology and Immunogen Discovery (CHAVI-ID), The Scripps Research Institute, La Jolla, United States; Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard, Cambridge, United StatesWe have developed a method to introduce novel paratopes into the human antibody repertoire by modifying the immunoglobulin (Ig) genes of mature B cells directly using genome editing technologies. We used CRISPR-Cas9 in a homology directed repair strategy, to replace the heavy chain (HC) variable region in B cell lines with that from an HIV broadly neutralizing antibody (bnAb), PG9. Our strategy is designed to function in cells that have undergone VDJ recombination using any combination of variable (V), diversity (D) and joining (J) genes. The modified locus expresses PG9 HC which pairs with native light chains (LCs) resulting in the cell surface expression of HIV specific B cell receptors (BCRs). Endogenous activation-induced cytidine deaminase (AID) in engineered cells allowed for Ig class switching and generated BCR variants with improved HIV neutralizing activity. Thus, BCRs engineered in this way retain the genetic flexibility normally required for affinity maturation during adaptive immune responses. Peripheral blood derived primary B cells from three different donors were edited using this strategy. Engineered cells could bind the PG9 epitope and sequenced mRNA showed PG9 HC transcribed as several different isotypes after culture with CD40 ligand and IL-4.https://elifesciences.org/articles/42995CAR-BB cellengineeringHIVbnAbvaccine