Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra Biome

Rising temperatures caused by global warming are affecting the distributions of many plant and animal species across the world. This can lead to structural changes in entire ecosystems, and serious, persistent environmental consequences. However, many of these changes occur in vast and poorly access...

Full description

Bibliographic Details
Main Authors: Karol Stanski, Isla H. Myers-Smith, Christopher G. Lucas
Format: Article
Language:English
Published: IEEE 2021-01-01
Series:IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing
Subjects:
Online Access:https://ieeexplore.ieee.org/document/9531417/
id doaj-6652703eb20c462ab163071acefa992d
record_format Article
spelling doaj-6652703eb20c462ab163071acefa992d2021-09-24T23:00:06ZengIEEEIEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing2151-15352021-01-01149287929610.1109/JSTARS.2021.31103659531417Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra BiomeKarol Stanski0https://orcid.org/0000-0001-7567-9722Isla H. Myers-Smith1https://orcid.org/0000-0002-8417-6112Christopher G. Lucas2https://orcid.org/0000-0002-6655-8627School of Informatics, University of Edinburgh, Edinburgh, U.K.School of GeoSciences, University of Edinburgh, Edinburgh, U.K.School of Informatics, University of Edinburgh, Edinburgh, U.K.Rising temperatures caused by global warming are affecting the distributions of many plant and animal species across the world. This can lead to structural changes in entire ecosystems, and serious, persistent environmental consequences. However, many of these changes occur in vast and poorly accessible biomes and involve myriad species. As a consequence, conventional methods of measurement and data analysis are resource-intensive, restricted in scope, and in some cases, intractable for measuring species changes in remote areas. In this article, we introduce a method for detecting flowers of tundra plant species in large data sets obtained by aerial drones, making it possible to understand ecological change at scale, in remote areas. We focus on the sedge species <italic>E. vaginatum</italic> that is dominant at the investigated tundra field site in the Canadian Arctic. Our system is a modified version of the Faster R-CNN architecture capable of real-world plant phenology analysis. Our model outperforms experienced human annotators in both detection and counting, recording much higher recall and comparable level of precision, regardless of the image quality caused by varying weather conditions during the data collection. (K. Stanski, GitHub - karoleks4/flower-detection: Flower detection using object analysis: New ways to quantify plant phenology in a warming tundra biome. GitHub. Accessed: Sep. 17, 2021. [Online]. Available: <uri>https://github.com/karoleks4/flower-detection</uri>.)https://ieeexplore.ieee.org/document/9531417/Object recognitionremote sensing
collection DOAJ
language English
format Article
sources DOAJ
author Karol Stanski
Isla H. Myers-Smith
Christopher G. Lucas
spellingShingle Karol Stanski
Isla H. Myers-Smith
Christopher G. Lucas
Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra Biome
IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing
Object recognition
remote sensing
author_facet Karol Stanski
Isla H. Myers-Smith
Christopher G. Lucas
author_sort Karol Stanski
title Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra Biome
title_short Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra Biome
title_full Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra Biome
title_fullStr Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra Biome
title_full_unstemmed Flower Detection Using Object Analysis: New Ways to Quantify Plant Phenology in a Warming Tundra Biome
title_sort flower detection using object analysis: new ways to quantify plant phenology in a warming tundra biome
publisher IEEE
series IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing
issn 2151-1535
publishDate 2021-01-01
description Rising temperatures caused by global warming are affecting the distributions of many plant and animal species across the world. This can lead to structural changes in entire ecosystems, and serious, persistent environmental consequences. However, many of these changes occur in vast and poorly accessible biomes and involve myriad species. As a consequence, conventional methods of measurement and data analysis are resource-intensive, restricted in scope, and in some cases, intractable for measuring species changes in remote areas. In this article, we introduce a method for detecting flowers of tundra plant species in large data sets obtained by aerial drones, making it possible to understand ecological change at scale, in remote areas. We focus on the sedge species <italic>E. vaginatum</italic> that is dominant at the investigated tundra field site in the Canadian Arctic. Our system is a modified version of the Faster R-CNN architecture capable of real-world plant phenology analysis. Our model outperforms experienced human annotators in both detection and counting, recording much higher recall and comparable level of precision, regardless of the image quality caused by varying weather conditions during the data collection. (K. Stanski, GitHub - karoleks4/flower-detection: Flower detection using object analysis: New ways to quantify plant phenology in a warming tundra biome. GitHub. Accessed: Sep. 17, 2021. [Online]. Available: <uri>https://github.com/karoleks4/flower-detection</uri>.)
topic Object recognition
remote sensing
url https://ieeexplore.ieee.org/document/9531417/
work_keys_str_mv AT karolstanski flowerdetectionusingobjectanalysisnewwaystoquantifyplantphenologyinawarmingtundrabiome
AT islahmyerssmith flowerdetectionusingobjectanalysisnewwaystoquantifyplantphenologyinawarmingtundrabiome
AT christopherglucas flowerdetectionusingobjectanalysisnewwaystoquantifyplantphenologyinawarmingtundrabiome
_version_ 1717369324459524096