POPBAM: Tools for Evolutionary Analysis of Short Read Sequence Alignments

POPBAM: Tools for Evolutionary Analysis of Short Read Sequence Alignments

Show other versions (1)

Bibliographic Details
Main Author:	Daniel Garrigan
Format:	Article
Language:	English
Published:	SAGE Publishing 2013-09-01
Series:	Evolutionary Bioinformatics
Online Access:	http://www.la-press.com/popbam-tools-for-evolutionary-analysis-of-short-read-sequence-alignmen-article-a3854

Similar Items

POPBAM: Tools for Evolutionary Analysis of Short Read Sequence Alignments
by: Daniel Garrigan
Published: (2013-01-01)

Optimal spliced alignments of short sequence reads
by: Rätsch Gunnar, et al.
Published: (2008-10-01)

CGAP-align: a high performance DNA short read alignment tool.
by: Yaoliang Chen, et al.
Published: (2013-01-01)

A Review on Sequence Alignment Algorithms for Short Reads Based on Next-Generation Sequencing
by: Jeongkyu Kim, et al.
Published: (2020-01-01)

Develop RNA short reads alignment tool based on GPU with CUDA
by: Sheng Ta Lee, et al.
Published: (2012)

Short-read DNA sequence alignment with custom designed FPGA-based hardware
by: Hall, Adam
Published: (2010)

Short-read DNA sequence alignment with custom designed FPGA-based hardware
by: Hall, Adam
Published: (2010)

Short-read DNA sequence alignment with custom designed FPGA-based hardware
by: Hall, Adam
Published: (2010)

Comparison of Short-Read Sequence Aligners Indicates Strengths and Weaknesses for Biologists to Consider
by: Ryan Musich, et al.
Published: (2021-04-01)

Multiple sequence alignment accuracy and evolutionary distance estimation
by: Rosenberg Michael S
Published: (2005-11-01)

The multiple alignments of very short sequences
by: Kristóf Takács, et al.
Published: (2021-07-01)

The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences
by: Avraam Tapinos, et al.
Published: (2019-04-01)

BarraCUDA - a fast short read sequence aligner using graphics processing units
by: Klus Petr, et al.
Published: (2012-01-01)

An analysis of the feasibility of short read sequencing
by: Whiteford, Nava, et al.
Published: (2005)

Improving PacBio long read accuracy by short read alignment.
by: Kin Fai Au, et al.
Published: (2012-01-01)

Analysis and improvement on the pairwise sequence alignment tool:BLAST
by: 江欣倩
Published: (2003)

Evolutionary distance estimation and fidelity of pair wise sequence alignment
by: Rosenberg Michael S
Published: (2005-04-01)

Using Evolutionary Computation to Solve the Multiple Protein Sequence Alignment
by: Cheng Chen Ho, et al.
Published: (2003)

Alignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision Medicine
by: Hao Ye, et al.
Published: (2015-11-01)

A sensitive short read homology search tool for paired-end read sequencing data
by: Prapaporn Techa-Angkoon, et al.
Published: (2017-10-01)

Fast and SNP-aware short read alignment with SALT
by: Wei Quan, et al.
Published: (2021-08-01)

Bioinformatic analysis of genomic sequencing data : read alignment and variant evaluation
by: Frousios, Kimon
Published: (2014)

Long Read Error Correction by Short-Read Alignment Using FM-Index
by: Hsieh, Yi-Te, et al.
Published: (2015)

lra: A long read aligner for sequences and contigs.
by: Jingwen Ren, et al.
Published: (2021-06-01)

Accurate spliced alignment of long RNA sequencing reads
by: Mäkinen, V., et al.
Published: (2021)

Oculus: faster sequence alignment by streaming read compression
by: Veeneman Brendan A, et al.
Published: (2012-11-01)

Efficient alignment of pyrosequencing reads for re-sequencing applications
by: Russo Luis MS, et al.
Published: (2011-05-01)

Covariance of maximum likelihood evolutionary distances between sequences aligned pairwise
by: Dessimoz Christophe, et al.
Published: (2008-06-01)

MOST: a modified MLST typing tool based on short read sequencing
by: Rediat Tewolde, et al.
Published: (2016-08-01)

GATA: a graphic alignment tool for comparative sequence analysis
by: Nix David A, et al.
Published: (2005-01-01)

Multiple Sequence Alignment: An Evolutionary Programming Based Algorithm with Local Search
by: Kuan-Hung Liu, et al.
Published: (2003)

Software Visualization Tool Construction for Pairwise Sequence Alignment Analysis
by: Chin-Shing Chen, et al.
Published: (2004)

Short read sequence typing (SRST): multi-locus sequence types from short reads
by: Inouye Michael, et al.
Published: (2012-07-01)

Choice of reference sequence and assembler for alignment of Listeria monocytogenes short-read sequence data greatly influences rates of error in SNP analyses.
by: Arthur W Pightling, et al.
Published: (2014-01-01)

Auto Sequencer: A DNA Sequence Alignment and Assembly Tool
by: Abhi Aggarwal, et al.
Published: (2018-06-01)

Arioc: High-concurrency short-read alignment on multiple GPUs.
by: Richard Wilton, et al.
Published: (2020-11-01)

Short Read Alignment Based on Maximal Approximate Match Seeds
by: Wei Quan, et al.
Published: (2020-11-01)

Modeling Evolutionary Constraints and Improving Multiple Sequence Alignments using Residue Couplings
by: Hossain, K.S.M. Tozammel
Published: (2018)

TSP-based Evolutionary Approaches for Bioinformatics Applications: Microarray, Sequencing, Alignment, and Phylogeny
by: Huai-Kuang Tsai, et al.
Published: (2003)

Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences
by: Cesare de Filippo, et al.
Published: (2018-10-01)