GRASShopPER-An algorithm for de novo assembly based on GPU alignments.

GRASShopPER-An algorithm for de novo assembly based on GPU alignments.

Next generation sequencers produce billions of short DNA sequences in a massively parallel manner, which causes a great computational challenge in accurately reconstructing a genome sequence de novo using these short sequences. Here, we propose the GRASShopPER assembler, which follows an approach of...

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Bibliographic Details
Main Authors: Aleksandra Swiercz, Wojciech Frohmberg, Michal Kierzynka, Pawel Wojciechowski, Piotr Zurkowski, Jan Badura, Artur Laskowski, Marta Kasprzak, Jacek Blazewicz
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2018-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC6095601?pdf=render

Internet

http://europepmc.org/articles/PMC6095601?pdf=render

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