UltraPse: A Universal and Extensible Software Platform for Representing Biological Sequences

UltraPse: A Universal and Extensible Software Platform for Representing Biological Sequences

With the avalanche of biological sequences in public databases, one of the most challenging problems in computational biology is to predict their biological functions and cellular attributes. Most of the existing prediction algorithms can only handle fixed-length numerical vectors. Therefore, it is...

Full description

Bibliographic Details
Main Authors:	Pu-Feng Du, Wei Zhao, Yang-Yang Miao, Le-Yi Wei, Likun Wang
Format:	Article
Language:	English
Published:	MDPI AG 2017-11-01
Series:	International Journal of Molecular Sciences
Subjects:	pseudo-amino acid compositions pseudo-k nucleotide compositions extensible software
Online Access:	https://www.mdpi.com/1422-0067/18/11/2400

Similar Items

PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets
by: Pufeng Du, et al.
Published: (2014-02-01)

iSNO-AAPair: incorporating amino acid pairwise coupling into PseAAC for predicting cysteine S-nitrosylation sites in proteins
by: Yan Xu, et al.
Published: (2013-10-01)

Prediction of endoplasmic reticulum resident proteins using fragmented amino acid composition and support vector machine
by: Ravindra Kumar, et al.
Published: (2017-09-01)

Identifying RNA N6-Methyladenosine Sites in Escherichia coli Genome
by: Jidong Zhang, et al.
Published: (2018-05-01)

Chiral Ligand Exchange Chromatography: Separation of Enantiomeric Mixtures of Underivatized a-Amino Acids under UV Detection
by: Nazareth Patricia M. P., et al.
Published: (2002-01-01)

Predicting Endoplasmic Reticulum Resident Proteins Using Auto-Cross Covariance Transformation With a U-Shaped Residue Weight-Transfer Function
by: Yang-Yang Miao, et al.
Published: (2019-12-01)

Identification of D Modification Sites by Integrating Heterogeneous Features in <i>Saccharomyces cerevisiae</i>
by: Pengmian Feng, et al.
Published: (2019-01-01)

EnACP: An Ensemble Learning Model for Identification of Anticancer Peptides
by: Ruiquan Ge, et al.
Published: (2020-07-01)

IonchanPred 2.0: A Tool to Predict Ion Channels and Their Types
by: Ya-Wei Zhao, et al.
Published: (2017-08-01)

PseUI: Pseudouridine sites identification based on RNA sequence information
by: Jingjing He, et al.
Published: (2018-08-01)

On a generalization of KU-algebras pseudo-KU algebras
by: Daniel A. Romano
Published: (2020-06-01)

iNR-Drug: Predicting the Interaction of Drugs with Nuclear Receptors in Cellular Networking
by: Yue-Nong Fan, et al.
Published: (2014-03-01)

Numerical Characterization of Protein Sequences Based on the Generalized Chou’s Pseudo Amino Acid Composition
by: Chun Li, et al.
Published: (2016-12-01)

Pseudo-Ductility, Morphology and Fractography Resulting from the Synergistic Effect of CaCO<sub>3</sub> and Bentonite in HDPE Polymer Nano Composite
by: Tauseef Ahmed, et al.
Published: (2020-07-01)

Enabling pseudo-ductility in geopolymer based glass-ceramics matrix composites by slurry dilution
by: Gilles Dusserre, et al.
Published: (2021-09-01)

Generalized trace pseudo-spectrum of matrix pencils
by: Aymen Ammar, et al.
Published: (2019-08-01)

"Pseudo" nomenclature in dermatology: What′s in a name?
by: Sangita Ghosh, et al.
Published: (2013-01-01)

CONTACT INTEGRABLE EXTENSIONS OF SYMMETRY PSEUDO-GROUP AND COVERINGS FOR THE R-th DOUBLE MODIFIED DISPERSIONLESS KADOMTSEV-PETVIASHVILI EQUATION
by: O. I. Morozov, et al.
Published: (2016-12-01)

Wirtinger integral inequalities for pseudo-integrals and pseudo-additive measure
by: Jing Guo, et al.
Published: (2021-07-01)

Practical hints and tips for solution of pseudo-merohedric twins: three case studies
by: S. R. Parkin
Published: (2021-05-01)

New Types of Pseudo Ideals in Pseudo Q-algebra
by: Abdullah et al.
Published: (2019-06-01)

iRSpot-TNCPseAAC: Identify Recombination Spots with Trinucleotide Composition and Pseudo Amino Acid Components
by: Wang-Ren Qiu, et al.
Published: (2014-01-01)

Properties on measure pseudo almost automorphic functions and applications to fractional differential equations in Banach spaces
by: Yong-Kui Chang, et al.
Published: (2018-02-01)

Molecular Science for Drug Development and Biomedicine
Published: (2014)

Continuity and compositions of operators with kernels in ultra-test function and ultra-distribution spaces
by: Chen, Yuanyuan
Published: (2016)

Quasi-Isotropic and Pseudo-Ductile Highly Aligned Discontinuous Fibre Composites Manufactured with the HiPerDiF (High Performance Discontinuous Fibre) Technology
by: M. L. Longana, et al.
Published: (2019-06-01)

Efficiency Bound of Local Z-Estimators on Discrete Sample Spaces
by: Takafumi Kanamori
Published: (2016-07-01)

Some results on pseudo-Q algebras
by: Akbar Rezaei, et al.
Published: (2017-12-01)

Teoria e prática: estudo e tradução das epístolas e invectivas de Pseudo-Salústio e Pseudo-Cícero à luz dos Progymnásmata
by: Rodrigo Garcia Manoel
Published: (2014)

Teoria e prática: estudo e tradução das epístolas e invectivas de Pseudo-Salústio e Pseudo-Cícero à luz dos Progymnásmata
by: Manoel, Rodrigo Garcia
Published: (2014)

Detecting Succinylation sites from protein sequences using ensemble support vector machine
by: Qiao Ning, et al.
Published: (2018-06-01)

Pseudo-Aristoteles (Pseudo-Alexander) Supplementa Problematorum: A New Edition of the Greek Text, with Introduction and Annotated Translation by Sophia Kapetanaki and Robert W. Sharples edd.
by: Andrea Falcon
Published: (2009-01-01)

Optimization of Storage Medium for Hematological Reference Samples in External Quality Assessment
by: Ngoc Nguyen Vo, et al.
Published: (2021-09-01)

Valuations and their generalizations for UP-algebras
by: Siriwan Pawai, et al.
Published: (2020-06-01)

Compliant Micron-Sized Patterned InGaN Pseudo-Substrates Utilizing Porous GaN
by: Shubhra S. Pasayat, et al.
Published: (2020-01-01)

Réponses écophysiologiques des espèces toxiques de Pseudo-nitzschia aux variations environnementales liées au changement climatique
by: Ayache, Nour
Published: (2018)

Virtual Soft Sensor of the Feedstock Composition of the Catalytic Reforming Unit
by: Natalia Koteleva, et al.
Published: (2021-07-01)

Seismic Material Properties of Reinforced Concrete and Steel Casing Composite Concrete in Elevated Pile-Group Foundation
by: Zhou Mi, et al.
Published: (2015-09-01)

Sugar-derived oxazolone pseudotetrapeptide as γ-turn inducer and anion-selective transporter
by: Sachin S. Burade, et al.
Published: (2019-10-01)

Effects of Organic and Inorganic Nitrogen on the Growth and Production of Domoic Acid by Pseudo-nitzschia multiseries and P. australis (Bacillariophyceae) in Culture
by: Véronique Martin-Jézéquel, et al.
Published: (2015-11-01)