Towards Understanding the Pathogenicity of DROSHA Mutations in Oncohematology

Myelodysplastic syndrome (MDS) refers to a heterogeneous group of closely related clonal hematopoietic disorders, which are characterized by accumulation of somatic mutations. The acquired mutation burden is suggested to define the pathway and consequent phenotype of the pathology. Recent studies ha...

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Main Authors: Dmitrii S. Bug, Artem V. Tishkov, Ivan S. Moiseev, Yuri B. Porozov, Natalia V. Petukhova
Format: Article
Language:English
Published: MDPI AG 2021-09-01
Series:Cells
Subjects:
Online Access:https://www.mdpi.com/2073-4409/10/9/2357
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spelling doaj-5cef63c545ec4c59a1a4445c3454ca462021-09-25T23:52:45ZengMDPI AGCells2073-44092021-09-01102357235710.3390/cells10092357Towards Understanding the Pathogenicity of DROSHA Mutations in OncohematologyDmitrii S. Bug0Artem V. Tishkov1Ivan S. Moiseev2Yuri B. Porozov3Natalia V. Petukhova4Bioinformatics Research Center, Pavlov First Saint Petersburg Medical State University, 197022 St. Petersburg, RussiaBioinformatics Research Center, Pavlov First Saint Petersburg Medical State University, 197022 St. Petersburg, RussiaR.M. Gorbacheva Scientific Research Institute of Pediatric Hematology and Transplantation, Pavlov First Saint Petersburg State Medical University, 197022 St. Petersburg, RussiaWorld-Class Research Center “Digital Biodesign and Personalized Healthcare”, I.M. Sechenov First Moscow State Medical University, 119991 Moscow, RussiaBioinformatics Research Center, Pavlov First Saint Petersburg Medical State University, 197022 St. Petersburg, RussiaMyelodysplastic syndrome (MDS) refers to a heterogeneous group of closely related clonal hematopoietic disorders, which are characterized by accumulation of somatic mutations. The acquired mutation burden is suggested to define the pathway and consequent phenotype of the pathology. Recent studies have called attention to the role of miRNA biogenesis genes in MDS progression; in particular, the mutational pressure of the <i>DROSHA</i> gene was determined. Therefore, this highlights the importance of studying the impact of all collected missense mutations found within the <i>DROSHA</i> gene in oncohematology that might affect the functionality of the protein. In this study, the selected mutations were extensively examined by computational screening, and the most deleterious were subjected to a further molecular dynamic simulation in order to uncover the molecular mechanism of the structural damage to the protein altering its biological function. The most significant effect was found for variants I625K, L1047S, and H1170D, presumably affecting the endonuclease activity of DROSHA. Such alterations arisen during MDS progression should be taken into consideration as evoking certain clinical traits in the malignifying clonal evolution.https://www.mdpi.com/2073-4409/10/9/2357DROSHAmyelodysplastic syndromevariants effect predictionprotein modelingmolecular dynamics
collection DOAJ
language English
format Article
sources DOAJ
author Dmitrii S. Bug
Artem V. Tishkov
Ivan S. Moiseev
Yuri B. Porozov
Natalia V. Petukhova
spellingShingle Dmitrii S. Bug
Artem V. Tishkov
Ivan S. Moiseev
Yuri B. Porozov
Natalia V. Petukhova
Towards Understanding the Pathogenicity of DROSHA Mutations in Oncohematology
Cells
DROSHA
myelodysplastic syndrome
variants effect prediction
protein modeling
molecular dynamics
author_facet Dmitrii S. Bug
Artem V. Tishkov
Ivan S. Moiseev
Yuri B. Porozov
Natalia V. Petukhova
author_sort Dmitrii S. Bug
title Towards Understanding the Pathogenicity of DROSHA Mutations in Oncohematology
title_short Towards Understanding the Pathogenicity of DROSHA Mutations in Oncohematology
title_full Towards Understanding the Pathogenicity of DROSHA Mutations in Oncohematology
title_fullStr Towards Understanding the Pathogenicity of DROSHA Mutations in Oncohematology
title_full_unstemmed Towards Understanding the Pathogenicity of DROSHA Mutations in Oncohematology
title_sort towards understanding the pathogenicity of drosha mutations in oncohematology
publisher MDPI AG
series Cells
issn 2073-4409
publishDate 2021-09-01
description Myelodysplastic syndrome (MDS) refers to a heterogeneous group of closely related clonal hematopoietic disorders, which are characterized by accumulation of somatic mutations. The acquired mutation burden is suggested to define the pathway and consequent phenotype of the pathology. Recent studies have called attention to the role of miRNA biogenesis genes in MDS progression; in particular, the mutational pressure of the <i>DROSHA</i> gene was determined. Therefore, this highlights the importance of studying the impact of all collected missense mutations found within the <i>DROSHA</i> gene in oncohematology that might affect the functionality of the protein. In this study, the selected mutations were extensively examined by computational screening, and the most deleterious were subjected to a further molecular dynamic simulation in order to uncover the molecular mechanism of the structural damage to the protein altering its biological function. The most significant effect was found for variants I625K, L1047S, and H1170D, presumably affecting the endonuclease activity of DROSHA. Such alterations arisen during MDS progression should be taken into consideration as evoking certain clinical traits in the malignifying clonal evolution.
topic DROSHA
myelodysplastic syndrome
variants effect prediction
protein modeling
molecular dynamics
url https://www.mdpi.com/2073-4409/10/9/2357
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