Deep learning methods in protein structure prediction

Deep learning methods in protein structure prediction

Protein Structure Prediction is a central topic in Structural Bioinformatics. Since the ’60s statistical methods, followed by increasingly complex Machine Learning and recently Deep Learning methods, have been employed to predict protein structural information at various levels of detail. In this re...

Full description

Bibliographic Details
Main Authors:	Mirko Torrisi, Gianluca Pollastri, Quan Le
Format:	Article
Language:	English
Published:	Elsevier 2020-01-01
Series:	Computational and Structural Biotechnology Journal
Subjects:	Deep learning Protein structure prediction Machine learning
Online Access:	http://www.sciencedirect.com/science/article/pii/S2001037019304441

Similar Items

Protein contact prediction based on the Tiramisu deep learning architecture
by: Tsardakas Renhuldt, Nikos
Published: (2018)

Template-based prediction of protein structure with deep learning
by: Haicang Zhang, et al.
Published: (2020-12-01)

PYTHIA: Deep Learning Approach for Local Protein Conformation Prediction
by: Gabriel Cretin, et al.
Published: (2021-08-01)

Deep Learning-Based Advances in Protein Structure Prediction
by: Subash C. Pakhrin, et al.
Published: (2021-05-01)

Editorial: Feature Representation and Learning Methods With Applications in Protein Secondary Structure
by: Ni Yan, et al.
Published: (2021-09-01)

Performance Analysis of Deep Learning Methods for Protein Contact Prediction in CASP13
by: Romina Valdez, et al.
Published: (2021-07-01)

Combining Deep Neural Networks for Protein Secondary Structure Prediction
by: Shusen Zhou, et al.
Published: (2020-01-01)

Deep learning methods for protein torsion angle prediction
by: Haiou Li, et al.
Published: (2017-09-01)

Sequence similarity governs generalizability of de novo deep learning models for RNA secondary structure prediction
by: Qiu, X.
Published: (2023)

Towards Structured Prediction in Bioinformatics with Deep Learning
by: Li, Yu
Published: (2020)

A Guide on Deep Learning for Complex Trait Genomic Prediction
by: Miguel Pérez-Enciso, et al.
Published: (2019-07-01)

Protein function prediction with gene ontology: from traditional to deep learning models
by: Thi Thuy Duong Vu, et al.
Published: (2021-08-01)

An integration of deep learning with feature embedding for protein–protein interaction prediction
by: Yu Yao, et al.
Published: (2019-06-01)

Prediction of 8-state protein secondary structures by a novel deep learning architecture
by: Buzhong Zhang, et al.
Published: (2018-08-01)

DeepComplex: A Web Server of Predicting Protein Complex Structures by Deep Learning Inter-chain Contact Prediction and Distance-Based Modelling
by: Farhan Quadir, et al.
Published: (2021-08-01)

DeepDist: real-value inter-residue distance prediction with deep residual convolutional network
by: Tianqi Wu, et al.
Published: (2021-01-01)

SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning
by: Jack Hanson, et al.
Published: (2019-12-01)

RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning
by: Yujuan Gao, et al.
Published: (2018-05-01)

Deep Learning Approach for Software Maintainability Metrics Prediction
by: Sudan Jha, et al.
Published: (2019-01-01)

Recent Advances in the Prediction of Protein Structural Classes: Feature Descriptors and Machine Learning Algorithms
by: Lin Zhu, et al.
Published: (2021-03-01)

Machine Learning Approaches for Quality Assessment of Protein Structures
by: Jiarui Chen, et al.
Published: (2020-04-01)

De novo Prediction of Moonlighting Proteins Using Multimodal Deep Ensemble Learning
by: Ying Li, et al.
Published: (2021-03-01)

AllesTM: predicting multiple structural features of transmembrane proteins
by: Peter Hönigschmid, et al.
Published: (2020-06-01)

The Application of Deep Learning in Cancer Prognosis Prediction
by: Wan Zhu, et al.
Published: (2020-03-01)

Can Machines Learn to Predict Weather? Using Deep Learning to Predict Gridded 500‐hPa Geopotential Height From Historical Weather Data
by: Jonathan A. Weyn, et al.
Published: (2019-08-01)

Recent Applications of Deep Learning Methods on Evolution- and Contact-Based Protein Structure Prediction
by: Donghyuk Suh, et al.
Published: (2021-06-01)

DeepCNF-D: Predicting Protein Order/Disorder Regions by Weighted Deep Convolutional Neural Fields
by: Sheng Wang, et al.
Published: (2015-07-01)

An Overview of Practical Applications of Protein Disorder Prediction and Drive for Faster, More Accurate Predictions
by: Xin Deng, et al.
Published: (2015-07-01)

A Review of Deep Learning Methods for Antibodies
by: Jordan Graves, et al.
Published: (2020-04-01)

Prediction of the Antioxidant Response Elements' Response of Compound by Deep Learning
by: Fang Bai, et al.
Published: (2019-05-01)

Protein interaction interface region prediction by geometric deep learning
by: Bailey-Kellogg, C., et al.
Published: (2021)

Crop Yield Prediction Using Deep Neural Networks
by: Saeed Khaki, et al.
Published: (2019-05-01)

Editorial: Deep Learning for Toxicity and Disease Prediction
by: Ping Gong, et al.
Published: (2020-02-01)

Predicting Coherent Turbulent Structures via Deep Learning
by: Alcántara-Ávila, F., et al.
Published: (2022)

Comparison of machine learning and deep learning techniques in promoter prediction across diverse species
by: Nikita Bhandari, et al.
Published: (2021-02-01)

A Modified Machine Learning Method Used in Protein Prediction in Bioinformatics
by: Chengduan Wang
Published: (2015-04-01)

DEVELOPMENT OF PREDICTIVE MODELING AND DEEP LEARNING CLASSIFICATION OF TAXI TRIP TOLLS
by: Al-Shoukry, S., et al.
Published: (2022)

Harvesting social media sentiment analysis to enhance stock market prediction using deep learning
by: Pooja Mehta, et al.
Published: (2021-04-01)

Protein Secondary Structure Prediction With a Reductive Deep Learning Method
by: Zhiliang Lyu, et al.
Published: (2021-06-01)

DeepSnap-Deep Learning Approach Predicts Progesterone Receptor Antagonist Activity With High Performance
by: Yasunari Matsuzaka, et al.
Published: (2020-01-01)

Cannot write session to /tmp/vufind_sessions/sess_cfvhppcld7np56g89ossl3eud1