The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets

The method of regularized stokeslets is widely used in microscale biological fluid dynamics due to its ease of implementation, natural treatment of complex moving geometries, and removal of singular functions to integrate. The standard implementation of the method is subject to high computational co...

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Main Authors: M. T. Gallagher, D. J. Smith
Format: Article
Language:English
Published: The Royal Society 2021-05-01
Series:Royal Society Open Science
Subjects:
Online Access:https://royalsocietypublishing.org/doi/10.1098/rsos.210108
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spelling doaj-591241723bfd4886bb9e7ac3c11e975b2021-06-10T08:57:27ZengThe Royal SocietyRoyal Society Open Science2054-57032021-05-018510.1098/rsos.210108The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokesletsM. T. Gallagher0D. J. Smith1Centre for Systems Modelling and Quantitative Biomedicine, University of Birmingham, Birmingham, UKSchool of Mathematics, University of Birmingham, Birmingham, UKThe method of regularized stokeslets is widely used in microscale biological fluid dynamics due to its ease of implementation, natural treatment of complex moving geometries, and removal of singular functions to integrate. The standard implementation of the method is subject to high computational cost due to the coupling of the linear system size to the numerical resolution required to resolve the rapidly varying regularized stokeslet kernel. Here, we show how Richardson extrapolation with coarse values of the regularization parameter is ideally suited to reduce the quadrature error, hence dramatically reducing the storage and solution costs without loss of accuracy. Numerical experiments on the resistance and mobility problems in Stokes flow support the analysis, confirming several orders of magnitude improvement in accuracy and/or efficiency.https://royalsocietypublishing.org/doi/10.1098/rsos.210108Stokes flowstokesletsbiological fluid dynamics
collection DOAJ
language English
format Article
sources DOAJ
author M. T. Gallagher
D. J. Smith
spellingShingle M. T. Gallagher
D. J. Smith
The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
Royal Society Open Science
Stokes flow
stokeslets
biological fluid dynamics
author_facet M. T. Gallagher
D. J. Smith
author_sort M. T. Gallagher
title The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
title_short The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
title_full The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
title_fullStr The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
title_full_unstemmed The art of coarse Stokes: Richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
title_sort art of coarse stokes: richardson extrapolation improves the accuracy and efficiency of the method of regularized stokeslets
publisher The Royal Society
series Royal Society Open Science
issn 2054-5703
publishDate 2021-05-01
description The method of regularized stokeslets is widely used in microscale biological fluid dynamics due to its ease of implementation, natural treatment of complex moving geometries, and removal of singular functions to integrate. The standard implementation of the method is subject to high computational cost due to the coupling of the linear system size to the numerical resolution required to resolve the rapidly varying regularized stokeslet kernel. Here, we show how Richardson extrapolation with coarse values of the regularization parameter is ideally suited to reduce the quadrature error, hence dramatically reducing the storage and solution costs without loss of accuracy. Numerical experiments on the resistance and mobility problems in Stokes flow support the analysis, confirming several orders of magnitude improvement in accuracy and/or efficiency.
topic Stokes flow
stokeslets
biological fluid dynamics
url https://royalsocietypublishing.org/doi/10.1098/rsos.210108
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