Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)

Bioluminescence, which living organisms such as fireflies emit light, has been studied extensively for over half a century. This intriguing reaction, having its origins in nature where glowing insects can signal things such as attraction or defense, is now widely used in biotechnology with applicati...

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Main Authors: Wanwipa Vongsangnak, Pramote Chumnanpuen, Ajaraporn Sriboonlert
Format: Article
Language:English
Published: PeerJ Inc. 2016-10-01
Series:PeerJ
Subjects:
Online Access:https://peerj.com/articles/2534.pdf
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spelling doaj-590daa3c82ac4ca3932aa0f09af0c7cc2020-11-24T22:55:58ZengPeerJ Inc.PeerJ2167-83592016-10-014e253410.7717/peerj.2534Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)Wanwipa Vongsangnak0Pramote Chumnanpuen1Ajaraporn Sriboonlert2Department of Zoology, Kasetsart University, Bangkok, ThailandDepartment of Zoology, Kasetsart University, Bangkok, ThailandDepartment of Genetics, Kasetsart University, Bangkok, ThailandBioluminescence, which living organisms such as fireflies emit light, has been studied extensively for over half a century. This intriguing reaction, having its origins in nature where glowing insects can signal things such as attraction or defense, is now widely used in biotechnology with applications of bioluminescence and chemiluminescence. Luciferase, a key enzyme in this reaction, has been well characterized; however, the enzymes involved in the biosynthetic pathway of its substrate, luciferin, remains unsolved at present. To elucidate the luciferin metabolism, we performed a de novo transcriptome analysis using larvae of the firefly species, Luciola aquatilis. Here, a comparative analysis is performed with the model coleopteran insect Tribolium casteneum to elucidate the metabolic pathways in L. aquatilis. Based on a template luciferin biosynthetic pathway, combined with a range of protein and pathway databases, and various prediction tools for functional annotation, the candidate genes, enzymes, and biochemical reactions involved in luciferin metabolism are proposed for L. aquatilis. The candidate gene expression is validated in the adult L. aquatilis using reverse transcription PCR (RT-PCR). This study provides useful information on the bio-production of luciferin in the firefly and will benefit to future applications of the valuable firefly bioluminescence system.https://peerj.com/articles/2534.pdfFirefly bioluminescenceFunctional annotationLuciferaseRNA-seq
collection DOAJ
language English
format Article
sources DOAJ
author Wanwipa Vongsangnak
Pramote Chumnanpuen
Ajaraporn Sriboonlert
spellingShingle Wanwipa Vongsangnak
Pramote Chumnanpuen
Ajaraporn Sriboonlert
Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)
PeerJ
Firefly bioluminescence
Functional annotation
Luciferase
RNA-seq
author_facet Wanwipa Vongsangnak
Pramote Chumnanpuen
Ajaraporn Sriboonlert
author_sort Wanwipa Vongsangnak
title Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)
title_short Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)
title_full Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)
title_fullStr Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)
title_full_unstemmed Transcriptome analysis reveals candidate genes involved in luciferin metabolism in Luciola aquatilis (Coleoptera: Lampyridae)
title_sort transcriptome analysis reveals candidate genes involved in luciferin metabolism in luciola aquatilis (coleoptera: lampyridae)
publisher PeerJ Inc.
series PeerJ
issn 2167-8359
publishDate 2016-10-01
description Bioluminescence, which living organisms such as fireflies emit light, has been studied extensively for over half a century. This intriguing reaction, having its origins in nature where glowing insects can signal things such as attraction or defense, is now widely used in biotechnology with applications of bioluminescence and chemiluminescence. Luciferase, a key enzyme in this reaction, has been well characterized; however, the enzymes involved in the biosynthetic pathway of its substrate, luciferin, remains unsolved at present. To elucidate the luciferin metabolism, we performed a de novo transcriptome analysis using larvae of the firefly species, Luciola aquatilis. Here, a comparative analysis is performed with the model coleopteran insect Tribolium casteneum to elucidate the metabolic pathways in L. aquatilis. Based on a template luciferin biosynthetic pathway, combined with a range of protein and pathway databases, and various prediction tools for functional annotation, the candidate genes, enzymes, and biochemical reactions involved in luciferin metabolism are proposed for L. aquatilis. The candidate gene expression is validated in the adult L. aquatilis using reverse transcription PCR (RT-PCR). This study provides useful information on the bio-production of luciferin in the firefly and will benefit to future applications of the valuable firefly bioluminescence system.
topic Firefly bioluminescence
Functional annotation
Luciferase
RNA-seq
url https://peerj.com/articles/2534.pdf
work_keys_str_mv AT wanwipavongsangnak transcriptomeanalysisrevealscandidategenesinvolvedinluciferinmetabolisminluciolaaquatiliscoleopteralampyridae
AT pramotechumnanpuen transcriptomeanalysisrevealscandidategenesinvolvedinluciferinmetabolisminluciolaaquatiliscoleopteralampyridae
AT ajarapornsriboonlert transcriptomeanalysisrevealscandidategenesinvolvedinluciferinmetabolisminluciolaaquatiliscoleopteralampyridae
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