Transcriptome sequencing and microarray development for the Manila clam, <it>Ruditapes philippinarum</it>: genomic tools for environmental monitoring

Transcriptome sequencing and microarray development for the Manila clam, <it>Ruditapes philippinarum</it>: genomic tools for environmental monitoring

<p>Abstract</p> <p>Background</p> <p>The Manila clam, <it>Ruditapes philippinarum</it>, is one of the major aquaculture species in the world and a potential sentinel organism for monitoring the status of marine ecosystems. However, genomic resources for <...

Full description

Bibliographic Details
Main Authors:	Patarnello Tomaso, Chelazzi Guido, Ciofi Claudio, Saavedra Carlos, Leite Ricardo B, Cancela Leonor M, Reinhardt Richard, Coppe Alessandro, Milan Massimo, Bortoluzzi Stefania, Bargelloni Luca
Format:	Article
Language:	English
Published:	BMC 2011-05-01
Series:	BMC Genomics
Online Access:	http://www.biomedcentral.com/1471-2164/12/234

Similar Items

Population genetics of the Manila clam (Ruditapes philippinarum) in East Asia
by: Yue Tan, et al.
Published: (2020-12-01)

Management Models of the Manila Clam (Ruditapes philippinarum) Fisheries in Invaded European Coastal Systems
by: Pedro Coelho, et al.
Published: (2021-07-01)

Effects of hypoxia on survival, behavior, metabolism and cellular damage of Manila clam (Ruditapes philippinarum).
by: Qiao Li, et al.
Published: (2019-01-01)

Filtration rates of the manila clam, Ruditapes philippinarum, in tidal flats with different hydrographic regimes.
by: Bon Joo Koo, et al.
Published: (2020-01-01)

Combined Effects of Temperature and Seston Concentration on the Physiological Energetics of the Manila Clam Ruditapes philippinarum.
by: Hee Yoon Kang, et al.
Published: (2016-01-01)

The new PFAS C6O4 and its effects on marine invertebrates: First evidence of transcriptional and microbiota changes in the Manila clam Ruditapes philippinarum
by: Ilaria Bernardini, et al.
Published: (2021-07-01)

A Microarray Study of Carpet-Shell Clam (Ruditapes decussatus) Shows Common and Organ-Specific Growth-Related Gene Expression Differences in Gills and Digestive Gland
by: Carlos Saavedra, et al.
Published: (2017-11-01)

Antimicrobial Defensin and DNA Traps in Manila Clam Ruditapes philippinarum: Implications for Their Roles in Immune Responses
by: Yijing Han, et al.
Published: (2021-07-01)

Long-term effects of fishing on physiological performance of the Manila clam (Ruditapes philippinarum) in the Lagoon of Venice
by: Vanessa Moschino, et al.
Published: (2011-03-01)

The Influence of Manila Clam (<i>Ruditapes philippinarum</i>) on Macrobenthos Communities in a Korean Tidal Ecosystem
by: Sang Lyeol Kim, et al.
Published: (2020-05-01)

The genetic diversity of wild and cultivated Manila clam (Ruditapes philippinarum) revealed by 29 novel microsatellite markers
by: Liwen Jiang, et al.
Published: (2018-07-01)

Potential for Genetic Improvement of Resistance to Perkinsus olseni in the Manila Clam, Ruditapes philippinarum, Using DNA Parentage Assignment and Mass Spawning
by: Morgan Smits, et al.
Published: (2020-10-01)

Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Manila clam Ruditapes philippinarum
by: Hongtao Nie, et al.
Published: (2017-03-01)

Shell Shape Analysis and Spatial Allometry Patterns of Manila Clam (Ruditapes philippinarum) in a Mesotidal Coastal Lagoon
by: Nathalie Caill-Milly, et al.
Published: (2012-01-01)

Molecular cloning and expression analysis of tyrosinases (tyr) in four shell-color strains of Manila clam Ruditapes philippinarum
by: Kunyin Jiang, et al.
Published: (2020-02-01)

Transcriptomics of in vitro immune-stimulated hemocytes from the Manila clam Ruditapes philippinarum using high-throughput sequencing.
by: Rebeca Moreira, et al.
Published: (2012-01-01)

Scanning electron microscopic observation of the in vitro cultured protozoan, Perkinsus olseni, isolated from the Manila clam, Ruditapes philippinarum
by: Dinesh Gajamange, et al.
Published: (2020-08-01)

Integrated transcriptomics and metabolomics analyses reveal benzo[a]pyrene enhances the toxicity of mercury to the Manila clam, Ruditapes philippinarum
by: Weiwei Jiang, et al.
Published: (2021-04-01)

'Oocyte maturation in the Manila clam, Tapes philippinarum'
by: Allsopp, Janet
Published: (1992)

First Evidence of In Vitro Effects of C6O4—A Substitute of PFOA—On Haemocytes of the Clam <i>Ruditapes philippinarum</i>
by: Jacopo Fabrello, et al.
Published: (2021-08-01)

Development and verification of a new maintenance and management method considering the geoenvironmental dynamics for a habitat of the Manila clam Ruditapes philippinarum
by: Kana Takeyama, et al.
Published: (2020-12-01)

Correction to: Scanning electron microscopic observation of the in vitro cultured protozoan, Perkinsus olseni, isolated from the Manila clam, Ruditapes philippinarum
by: Dinesh Gajamange, et al.
Published: (2020-09-01)

Effect of stocking density on growth and survival of juvenile Manila clams (Ruditapes philippinarum) farmed in suspended lanterns in a North Italian lagoon
by: Francesco Bordignon, et al.
Published: (2021-07-01)

NMR-Based Metabolomic Investigations on the Differential Responses in Adductor Muscles from Two Pedigrees of Manila Clam Ruditapes philippinarum to Cadmium and Zinc
by: Junbao Yu, et al.
Published: (2011-09-01)

Comparative Analysis of the nrDNA Repeat Unit of Manila Clam <i>Ruditapes philippinarum</i> and Quahog <i>Mercenaria mercenaria</i>
by: Zhansheng Guo, et al.
Published: (2021-09-01)

Identification of shell-color-related microRNAs in the Manila clam Ruditapes philippinarum using high-throughput sequencing of small RNA transcriptomes
by: Jianfeng Ding, et al.
Published: (2021-04-01)

Effects of the Fragrance Galaxolide on the Biomarker Responses of the Clam <i>Ruditapes philippinarum</i>
by: Graziano Rilievo, et al.
Published: (2021-05-01)

Implication of the Type IV Secretion System in the Pathogenicity of Vibrio tapetis, the Etiological Agent of Brown Ring Disease Affecting the Manila Clam Ruditapes philippinarum
by: Alexandra Rahmani, et al.
Published: (2021-04-01)

A Multi-Elements Isotope Approach to Assess the Geographic Provenance of Manila Clams (<i>Ruditapes philippinarum</i>) via Recombining Appropriate Elements
by: Eun-Ji Won, et al.
Published: (2021-03-01)

High parasite burden increases the surfacing and mortality of the Manila clam (Ruditapes philippinarum) in intertidal sandy mudflats on the west coast of Korea during hot summer
by: Ki-Woong Nam, et al.
Published: (2018-01-01)

Ammonia nitrogen exposure caused structural damages to gill mitochondria of clam Ruditapes philippinarum
by: Ming Cong, et al.
Published: (2021-10-01)

Enhancement of dietary effect of Nannochloropsis sp. on juvenile Ruditapes philippinarum clams by alginate hydrolysates
by: Yasuhiro Yamasaki, et al.
Published: (2018-02-01)

Life Cycle Assessment (LCA) Proves that Manila Clam Farming (<i>Ruditapes Philippinarum</i>) Is a Fully Sustainable Aquaculture Practice and a Carbon Sink
by: Edoardo Turolla, et al.
Published: (2020-06-01)

De novo assembly of Manila clam (<i>Ruditapes philippinarum</i>) and protozoan parasite (<i>Perkinsus olseni</i>) transcriptome from RNA-Seq data
by: Abul Farah Md. Hasanuzzaman, et al.
Published: (2014-06-01)

A study of the naturalisation and dispersal of a non-native bivalve, the Manila clam, Ruditapes philippinarum (Adams and Reeve 1850) in estuaries along the south coast of England
by: Harris, Matthew Richard
Published: (2016)

A microarray-based analysis of gametogenesis in two Portuguese populations of the European clam Ruditapes decussatus.
by: Joana Teixeira de Sousa, et al.
Published: (2014-01-01)

Seasonal Changes in Glycogen Contents in Various Tissues of the Edible Bivalves, Pen Shell Atrina lischkeana, Ark Shell Scapharca kagoshimensis, and Manila Clam Ruditapes philippinarum in West Japan
by: Tatsuya Yurimoto
Published: (2015-01-01)

Antioxidant Activity of Mytilus galloprovincialis and Ruditapes philippinarum
by: Sehat Çolakoğlu, et al.
Published: (2019-12-01)

The effect of predator netting on clam recruitment in Baynes Sound, B.C. with a special focus on the response of the Manila clam (Venerupis philippinarum)
by: Munroe, Daphne Marie
Published: (2010)

The Circulation of Type F <i>Clostridium perfringens</i> among Humans, Sewage, and <i>Ruditapes philippinarum</i> (Asari Clams)
by: Keita Yanagimoto, et al.
Published: (2020-08-01)

Cannot write session to /tmp/vufind_sessions/sess_ocrvn4pmmnsttul8gd67n66vph